Displaying 4 results from an estimated 4 matches for "fit12".
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fit1
2008 Feb 11
3
Difference between P.Value and adj.P.Value
Hallo,
> fit12<-lmFit(qrg[,1:2])
> t12<-toptable(fit12,adjust="fdr",number=25,genelist=qrg$genes[,1])
> t12
ID logFC t P.Value adj.P.Val B
522 PLAU_OP -6.836144 -8.420414 5.589416e-05 0.01212520 2.054965
1555 CD44_WIZ -6.569622 -8.227938 6.510169e-05...
2023 Aug 31
1
simulating future observations from heteroscedastic fits
...to heteroscedastic
data. A simple example is as follows:
(DF3_2 <- data.frame(y=c(1:3, 10*(1:3)),
gp=factor(rep(1:2, e=3))))
# I want to fit 4 models
# and simulate future observations from all 4:
fit11 <- lm(y~1, DF3_2)
fit21 <- lm(y~gp, DF3_2)
library(nlme)
(fit12 <- lme(y~1, data=DF3_2, random=~1|gp))
(fit22 <- lme(y~gp, data=DF3_2, random=~1|gp))
library(lme4)
(fit12r <- lmer(y~1+(1|gp), data=DF3_2, REML=FALSE))
(fit22r <- lmer(y~gp+(1|gp), data=DF3_2, REML=FALSE))
# I can simulate what I want for fit11 and fit21
# as follows:
simPred <- f...
2008 Jan 24
3
store variable as tab-del. txt-file
Hallo,
how can I store a variable as a tab-delimited txt-file? I crated a
variable with the following commands:
> fit12<-lmFit(qrg[,1:2])
> t12<-toptable(fit12,adjust="fdr",number=25,genelist=qrg$genes[,1])
> t12
ID logFC t P.Value adj.P.Val B
522 PLAU_OP -6.836144 -8.420414 5.589416e-05 0.01212520 2.054965
1555 CD44_WIZ -6.569622 -8.227938 6.510169e-05...
2005 Jul 13
2
Proportion test in three-chices experiment
Hi,
I wish to analyze with R the results of a perception experiment in which
subjects had to recognize each stimulus among three choices (this was a
forced-choice design). The experiment runs under two different
conditions and the data is like the following:
N1 : count of trials in condition 1
p11, p12, p13: proportions of choices 1, 2, and 3 in condition 1
N2 : count of trials in