search for: findmethods

Duncan that does indeed look to be the case. Many thanks! In particular, tests/reg-tests-1d.R optionally loads the Matrix namespace which allows the test to succeed. Compare: ~/R-rc_2019-04-21_r76409/bin/Rscript -e "options(warn=2); library(Matrix); res <- findMethods('isSymmetric'); print('success')" [1] "success" versus ~/R-rc_2019-04-21_r76409/bin/Rscript -e "options(warn=2); res <- findMethods('isSymmetric'); print('success')" Error in findMethods("isSymmetric") : ?...

...-devel/R/configure --prefix=/home/btyner/R-76409 --enable-R-shlib --with-blas --with-lapack --with-readline --without-recommended-packages ?? make ?? make check which fails at reg-tests-1d.R; the failure being: ?? > ## str() now even works with invalid objects: ?? > moS <- mo <- findMethods("isSymmetric") ?? Error in findMethods("isSymmetric") : ? ?? (converted from warning) non-generic function 'isSymmetric' given to findMethods() ?? Execution halted I am able to build revision 76407 from source just fine (using https://cran.r-project.org/src/base-pr...

...9 > --enable-R-shlib --with-blas --with-lapack --with-readline > --without-recommended-packages > ?? make > ?? make check > > which fails at reg-tests-1d.R; the failure being: > > ?? > ## str() now even works with invalid objects: > ?? > moS <- mo <- findMethods("isSymmetric") > ?? Error in findMethods("isSymmetric") : > ? ?? (converted from warning) non-generic function 'isSymmetric' given > to findMethods() > ?? Execution halted Likely the problem is that you don't have the recommended packages loaded....

Hello everyone. R-2.12.0, suse linux 11.3. I am debugging a package that uses S4 methods and R CMD check gives the following warning: > Warning in methods::findMethods(g, env) : > non-generic function 'mdm' given to findMethods() > See the information on DESCRIPTION files in the chapter 'Creating R > packages' of the 'Writing R Extensions' manual. I don't see anything obvious in that part of the R-exts but FWIW, here is my...

The package 'graph' defines classes graph and graphNEL (extending graph) and a union,graph,graph-method. These are all exported and fully documented. The package 'GSEABase' Imports: graph and importClassesFrom(graph, graphNEL). GSEABase defines methods on union for its own classes (not graph / graphNEL), and has exportMethods(union). union,graph,graph-method is not used in

...[1] Error in nancycats[1] : object of type 'S4' is not subsettable # "[" IS NOT USED HERE ### end R code And still, the method is defined in the environment: ### R code > showMethods("[", class="genind") Function: [ (package base) x="genind" > findMethods("[", classes="genind")$genind Method Definition: function (x, i, j, ..., drop = FALSE) { .local <- function (x, i, j, ..., loc = NULL, treatOther = TRUE, drop = FALSE) { if (missing(i)) i <- TRUE if (missing(j))...

.....make[3]: *** [reg-packages.Rout] Error 1 make[2]: *** [test-Reg] Error 2 make[1]: *** [test-all-basics] Error 1 make: *** [check] Error 2 locating tests/reg-packages.Rout.fail I find > stopifnot(require("myTst",lib = "myLib")) Loading required package: myTst > sm <- findMethods(show, where= as.environment("package:myTst")) > stopifnot(names(sm at names) == "foo") > unlink("myTst_*") > > ## More building & installing packages > ## NB: tests were added here for 2.11.0. > ## NB^2: do not do this in the R sources! > ## an...

...rnal(ClassLoader.java:319) at java.lang.Class.getDeclaredMethods0(Native Method) at java.lang.Class.privateGetDeclaredMethods(Class.java:2427) at java.lang.Class.privateGetPublicMethods(Class.java:2547) at java.lang.Class.getMethods(Class.java:1410) at org.apache.tomcat.util.IntrospectionUtils.findMethods(IntrospectionUtils.java:812) at org.apache.tomcat.util.IntrospectionUtils.setProperty(IntrospectionUtils.java:268) at org.apache.catalina.startup.SetAllPropertiesRule.begin(SetAllPropertiesRule.java:59) at org.apache.tomcat.util.digester.Digester.startElement(Digester.java:1276) at org.apache.x...

...If you have functions that manipulate MethodsList objects (e.g., from calling getMethods()), these should still work. But you might consider changing to newer utilities that should be faster and more convenient, at least when more than one argument is involved. The new utilities will be: findMethods(), which returns a simple list of methods (replacement for getMethods()); findMethodSignatures(), which returns a character matrix of signatures; and hasMethods(), which tests for the existence of methods. Cheers, John

The build system rolled up R-3.3.3.tar.gz (codename "Another Canoe") this morning. The list below details the changes in this release. You can get the source code from http://cran.r-project.org/src/base/R-3/R-3.3.3.tar.gz or wait for it to be mirrored at a CRAN site nearer to you. Binaries for various platforms will appear in due course. For the R Core Team, Peter Dalgaard

The build system rolled up R-3.3.3.tar.gz (codename "Another Canoe") this morning. The list below details the changes in this release. You can get the source code from http://cran.r-project.org/src/base/R-3/R-3.3.3.tar.gz or wait for it to be mirrored at a CRAN site nearer to you. Binaries for various platforms will appear in due course. For the R Core Team, Peter Dalgaard

..."methods" NA NA NA Enhances OS_type License Built myTst NA NA "What license is it under?" "2.14.1" > stopifnot(require("myTst",lib = "myLib")) Loading required package: myTst > sm <- findMethods(show, where= as.environment("package:myTst")) > stopifnot(names(sm at names) == "foo") > unlink("myTst_*") > > ## More building & installing packages > ## NB: tests were added here for 2.11.0. > ## NB^2: do not do this in the R sources! > ## a...

Hola, en la misma definici?n de la funci?n: # P15. Precipitation Seasonality(Coefficient of Variation) # the "1 +" is to avoid strange CVs for areas where mean rainfaill is < 1) p[,15] <- apply(prec+1, 1, cv) Un saludo, Jorge On Martes, 19 de Junio de 2018 13:07:27 Marcelino de la Cruz Rot escribi?: > Hola Jaume: > > Si miras el c?digo de biovars() ver?s que la

...> had been superseded by hash tables (environments) since R > 2.8.0 are being phased out. Objects of this class are no > longer assigned or used as metadata by the package. > > getMethods() is now deprecated, with its internal use replaced > by findMethods() and other changes. Creating objects from the > MethodsList class is also deprecated. > > o Parsing strings containing both octal/hex and Unicode escapes > now gives a warning and will become an error in R 2.12.0. > > > INSTALLATION > > o UTF-8 i...

...t metadata objects which had been superseded by hash tables (environments) since R 2.8.0 are being phased out. Objects of this class are no longer assigned or used as metadata by the package. getMethods() is now deprecated, with its internal use replaced by findMethods() and other changes. Creating objects from the MethodsList class is also deprecated. o Parsing strings containing both octal/hex and Unicode escapes now gives a warning and will become an error in R 2.12.0. INSTALLATION o UTF-8 is now used for the reference manual a...

...t metadata objects which had been superseded by hash tables (environments) since R 2.8.0 are being phased out. Objects of this class are no longer assigned or used as metadata by the package. getMethods() is now deprecated, with its internal use replaced by findMethods() and other changes. Creating objects from the MethodsList class is also deprecated. o Parsing strings containing both octal/hex and Unicode escapes now gives a warning and will become an error in R 2.12.0. INSTALLATION o UTF-8 is now used for the reference manual a...

...cense is it under?" NA License_restricts_use OS_type MD5sum NeedsCompilation Built myTst NA NA NA NA "3.6.2" > stopifnot(require("myTst",lib = "myLib")) Loading required package: myTst > sm <- findMethods(show, where= as.environment("package:myTst")) > stopifnot(names(sm at names) == "foo") > unlink("myTst_*") > > ## getPackageName() for "package:foo": > require('methods') > library(tools) > oo <- options(warn=2) > detach(&...

..., to extract from model objects a suitable value for use in BIC calculations. An S4 generic derived from it is defined in package stats4. ? Code for S4 reference-class methods is now examined for possible errors in non-local assignments. ? findClasses, getGeneric, findMethods and hasMethods are revised to deal consistently with the package= argument and be consistent with soft namespace policy for finding objects. ? tools::Rdiff() now has the option to return not only the status but a character vector of observed differences (which are still...

..., to extract from model objects a suitable value for use in BIC calculations. An S4 generic derived from it is defined in package stats4. ? Code for S4 reference-class methods is now examined for possible errors in non-local assignments. ? findClasses, getGeneric, findMethods and hasMethods are revised to deal consistently with the package= argument and be consistent with soft namespace policy for finding objects. ? tools::Rdiff() now has the option to return not only the status but a character vector of observed differences (which are still...

...Unicode encoding errors, line length and context stack overflows, and mis-specified argument lists to functions). o The "MethodsList" objects originally used for method selection are being phased out. New utilities provide simpler alternatives (see ?findMethods), and direct use of the mangled names for the objects is now deprecated. o Creating new S4 class and method definitions in an environment that could not be identified (as package, namespace or global) previously generated an error. It now results in creating and...