search for: fastlm

Displaying 15 results from an estimated 15 matches for "fastlm".

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2010 Sep 15
2
lapack in R 2.11.1 (Ubuntu 10.04.1)
...tall the package RcppArmadillo in my R 2.11.1 which I installed and regularly update via Ubuntu's repositories. When I try to install RcppArmadillo from CRAN I get: > install.packages('RcppArmadillo', lib='~/myRlibs') [...] g++ -shared -o RcppArmadillo.so RcppArmadillo.o fastLm.o -L/home/matias/myRlibs/Rcpp/lib -lRcpp -Wl,-rpath,/home/matias/myRlibs/Rcpp/lib -llapack -lblas -lgfortran -lm -L/usr/lib/R/lib -lR /usr/bin/ld: cannot find -llapack I believe this means I don't have lapack available to link to. Does anybody know how I can fix this? I really only...
2016 Jan 27
2
rstan warning messages
...version 3.2.3 from EPEL installed Start R and use the following command, but got warnings! install.packages("rstan", dependencies = TRUE, repos = "http://cran.r-project.org/") ... g++ -m64 -shared -L/usr/lib64/R/lib -L/usr/local/lib64 -o RcppEigen.so RcppEigen.o RcppExports.o fastLm.o -L/usr/lib64/R/lib -lRlapack -L/usr/lib64/R/lib -lRblas -lgfortran -lm -L/usr/lib64/R/lib -lR /usr/bin/ld: cannot find -lgfortran collect2: error: ld returned 1 exit status make: *** [RcppEigen.so] Error 1 ERROR: compilation failed for package 'RcppEigen' * removing '/usr/lib64/R/libr...
2015 Nov 23
3
MKL Acceleration encouraging; need adjust package builds?
...ols/cluster/6.2/R/3.2.2_mkl/lib64/R/include -I/usr/local/include -I"/panfs/pfs.acf.ku.edu/crmda/tools/lib64/R/3.2/site-library/Rcpp/include" -I../inst/include -fpic -O3 -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c fastLm.cpp -o fastLm.o g++ -shared -L/tools/cluster/6.2/R/3.2.2_mkl/lib64/R/lib -L/usr/local/lib64 -o RcppArmadillo.so RcppArmadillo.o RcppExports.o fastLm.o -L/panfs/pfs.acf.ku.edu/cluster/6.2/intel/2015/mkl/lib/intel64 -Wl,--no-as-needed -lmkl_gf_lp64 -Wl,--start-group -lmkl_gnu_thread -lmkl_core -Wl,--...
2015 Nov 23
0
MKL Acceleration encouraging; need adjust package builds?
...ols/cluster/6.2/R/3.2.2_mkl/lib64/R/include -I/usr/local/include -I"/panfs/pfs.acf.ku.edu/crmda/tools/lib64/R/3.2/site-library/Rcpp/include" -I../inst/include -fpic -O3 -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c fastLm.cpp -o fastLm.o g++ -shared -L/tools/cluster/6.2/R/3.2.2_mkl/lib64/R/lib -L/usr/local/lib64 -o https://na01.safelinks.protection.outlook.com/?url=RcppArmadillo.so&data=01%7c01%7cdavidsmi%40microsoft.com%7c80ae9ec8fef04c42eed808d2f42bf31d%7c72f988bf86f141af91ab2d7cd011db47%7c1&sdata=AwdY1xC7...
2017 Apr 27
2
R-3.4.0 and recommended packages
...to be re-installed for this version (unless installed with R-devel SVN revision r72375 or later). KernSmooth surely has .Fortran. Your spatial example had VR_frset failing, and that too is called by the old .C. A counter-example is eg my RcppEigen package -- I can load it and run example(fastLm) just fine as that uses .Call rather than .C or .Fortran. I think you are -- correct in that we need rebuilds -- but only for packages using .C and .Fortran calls to compiled This may be a use case for r-api-4. Or not as it doesn't break _all_ packages so I am not sure we should force _all...
2012 Jul 04
5
loop for regression
---------- Forwarded message ---------- From: Akhil dua <akhil.dua.12@gmail.com> Date: Wed, Jul 4, 2012 at 10:33 AM Subject: To: r-help@r-project.org Hi everyone I have data on stock prices and market indices and I need to run a seperate regression of every stock on market so I want to write a "for loop" so that I wont have to write codes again and again to run the
2011 Apr 23
2
Could I use R function lm or nlm in C code?
Dear R, I'm doing some simulation work and it takes me a lot of time to do it in R. So I try to implement it in C code, but I want to use some R functions directly for my lazy and the robustness of code. For example, I will use lm and nlm in my program. How could I use R's lm and nlm function directly? I thinks these functions are not included in the R's include directory. Do I need
2017 Oct 21
1
Problem when installing lme4 under Debian stretch
...nstall ed) in order to get the dependency nloptr to compile. Now the compilation of the dependency RcppEigen is running (which seems to have failed or was interrupted on your system, judging by the error message you posted). Surely more than five minutes ago my raspi started to compile the file fastLm.cpp ... I will let you know if I succeed. But Dirk is right when he points out that the efficiency of using such a system to compile lots of source packages is questionable. Maybe it would be a solution to deinstall the backport, remove the stretch-cran34 line from your sources.list and install...
2017 Apr 27
0
R-3.4.0 and recommended packages
...artin M?chler referred to in the answer to Bj?ran's call for help on r-help. > KernSmooth surely has .Fortran. Your spatial example had VR_frset failing, > and that too is called by the old .C. > > A counter-example is eg my RcppEigen package -- I can load it and run > example(fastLm) just fine as that uses .Call rather than .C or .Fortran. > > I think you are > > -- correct in that we need rebuilds > -- but only for packages using .C and .Fortran calls to compiled Yes. > This may be a use case for r-api-4. Or not as it doesn't break _all_ > packa...
2017 Apr 27
2
R-3.4.0 and recommended packages
Am Dienstag, 25. April 2017, 11:21:31 schrieb Dirk Eddelbuettel: > On 25 April 2017 at 16:11, Johannes Ranke wrote: > | This looks similar to what I got this morning when I tested my > | (unreleased) > | backport of R 3.4.0 to Debian jessie. My test was > | > | library(MASS) > | example(rlm) > | > | and there was an object that was not found. I am on a train on the way
2012 Feb 23
1
Improving performance of split-apply problem
Hello, I'm very new to R so my apologies if I'm making an obvious mistake. I have a data frame with ~170k rows and 14 numeric variables. The first 2 of those variables (let's call them group1 and group2) are used to define groups: each unique pair of (group1,group2) is a group. There are roughly 50k such unique groups, with sizes varying from 1 through 40 rows each. My objective is
2017 Oct 21
2
Problem when installing lme4 under Debian stretch
Thanks very much, Dirk! I gave that a try and got the following: pi at raspberrypi:~ $ sudo apt-get install r-cran-car Reading package lists... Done Building dependency tree Reading state information... Done Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been
2017 Apr 27
3
R-3.4.0 and recommended packages
...referred to in the answer to Bj?ran's call | for help on r-help. | | > KernSmooth surely has .Fortran. Your spatial example had VR_frset failing, | > and that too is called by the old .C. | > | > A counter-example is eg my RcppEigen package -- I can load it and run | > example(fastLm) just fine as that uses .Call rather than .C or .Fortran. | > | > I think you are | > | > -- correct in that we need rebuilds | > -- but only for packages using .C and .Fortran calls to compiled | | Yes. Here is a quick script snippet. Looks like about 1/3 of my r-cran-* packag...
2016 Jan 27
2
rstan warning messages
...> Start R and use the following command, but got warnings! > > install.packages("rstan", dependencies = TRUE, repos = > "http://cran.r-project.org/") ... > g++ -m64 -shared -L/usr/lib64/R/lib -L/usr/local/lib64 -o RcppEigen.so > g++ RcppEigen.o RcppExports.o fastLm.o -L/usr/lib64/R/lib -lRlapack > g++ -L/usr/lib64/R/lib -lRblas -lgfortran -lm -L/usr/lib64/R/lib -lR > /usr/bin/ld: cannot find -lgfortran > collect2: error: ld returned 1 exit status Install the gcc-gfortran package. > checking for curl-config... no > Cannot find curl-config In...
2020 Oct 08
3
Installing package fails at "testing if installed package can be loaded from temporary location"
Hi, I can not install packages from source which links to RcppArmadillo on Ubuntu 20.04 (after upgrading from 18.04). The following problem occurs: ** testing if installed package can be loaded from temporary location Error: package or namespace load failed for 'myPackage' in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object