RHEL 6 installed
R version 3.2.3 from EPEL installed
Start R and use the following command, but got warnings!
install.packages("rstan", dependencies = TRUE, repos =
"http://cran.r-project.org/")
...
g++ -m64 -shared -L/usr/lib64/R/lib -L/usr/local/lib64 -o RcppEigen.so
RcppEigen.o RcppExports.o fastLm.o -L/usr/lib64/R/lib -lRlapack
-L/usr/lib64/R/lib -lRblas -lgfortran -lm -L/usr/lib64/R/lib -lR
/usr/bin/ld: cannot find -lgfortran
collect2: error: ld returned 1 exit status
make: *** [RcppEigen.so] Error 1
ERROR: compilation failed for package 'RcppEigen'
* removing '/usr/lib64/R/library/RcppEigen'
...
** package 'RCurl' successfully unpacked and MD5 sums checked
checking for curl-config... no
Cannot find curl-config
ERROR: configuration failed for package 'RCurl'
* removing '/usr/lib64/R/library/RCurl'
...
ERROR: dependency 'RcppEigen' is not available for package
'rstan'
* removing '/usr/lib64/R/library/rstan'
...
1: In install.packages("rstan", dependencies = TRUE, repos =
"http://cran.r-project.org/") :
installation of package 'RcppEigen' had non-zero exit status
2: In install.packages("rstan", dependencies = TRUE, repos =
"http://cran.r-project.org/") :
installation of package 'RCurl' had non-zero exit status
3: In install.packages("rstan", dependencies = TRUE, repos =
"http://cran.r-project.org/") :
installation of package 'rstan' had non-zero exit status
Like to find a fix for items 1 and 2 as that should fix 3 :)
Where should I begin?
Thanks,
Larry Patrick
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On 01/27/2016 01:12 PM, Patrick, Larry B [CSSM] wrote:> RHEL 6 installed > R version 3.2.3 from EPEL installed > > Start R and use the following command, but got warnings! > > install.packages("rstan", dependencies = TRUE, repos = "http://cran.r-project.org/") > ... > g++ -m64 -shared -L/usr/lib64/R/lib -L/usr/local/lib64 -o RcppEigen.so RcppEigen.o RcppExports.o fastLm.o -L/usr/lib64/R/lib -lRlapack -L/usr/lib64/R/lib -lRblas -lgfortran -lm -L/usr/lib64/R/lib -lR > /usr/bin/ld: cannot find -lgfortran > collect2: error: ld returned 1 exit statusInstall the gcc-gfortran package.> checking for curl-config... no > Cannot find curl-configInstall the curl-devel package (it might also be called libcurl-devel). hth, ~tom =Red Hat
Confirmed that gcc-gfortran is installed
Package gcc-gfortran-4.4.7-16.el6.x86_64 already installed and latest
version
What could I check next?
I do not have the following installed and will get that done and tested again.
libcurl-devel
libidn-devel
Thanks,
Larry
-----Original Message-----
From: Tom Callaway [mailto:tcallawa at redhat.com]
Sent: Wednesday, January 27, 2016 12:32 PM
To: Patrick, Larry B [CSSM] <longplay at iastate.edu>; 'r-sig-fedora
at r-project.org' <r-sig-fedora at r-project.org>
Subject: Re: [R-sig-Fedora] rstan warning messages
On 01/27/2016 01:12 PM, Patrick, Larry B [CSSM] wrote:> RHEL 6 installed
> R version 3.2.3 from EPEL installed
>
> Start R and use the following command, but got warnings!
>
> install.packages("rstan", dependencies = TRUE, repos =
> "http://cran.r-project.org/") ...
> g++ -m64 -shared -L/usr/lib64/R/lib -L/usr/local/lib64 -o RcppEigen.so
> g++ RcppEigen.o RcppExports.o fastLm.o -L/usr/lib64/R/lib -lRlapack
> g++ -L/usr/lib64/R/lib -lRblas -lgfortran -lm -L/usr/lib64/R/lib -lR
> /usr/bin/ld: cannot find -lgfortran
> collect2: error: ld returned 1 exit status
Install the gcc-gfortran package.
> checking for curl-config... no
> Cannot find curl-config
Install the curl-devel package (it might also be called libcurl-devel).
hth,
~tom
=Red Hat