search for: f77blas

...and know almost nothing ?about compiling, so I would appreciate any help and advice y'all would care to offer. I am trying to compile the 64 bit version of R using a tuned ATLAS and LAPACK (ATLAS 3.9.24). I am running Ubunto 10.04 LTS (through wubi, FWIW). The ATLAS and LAPACK files (atlas.so, f77blas.so, lapack.so, and cblas.so) are sitting in the folder "/usr/local/atlas/lib" (together with the static .a versions and some other files. Following the R installation manual, I used the following configure string: ./configure --enable-R-shlib --enable-BLAS-shlib --with-blas="-L/usr...

...ble on CRAN. After upgrading r-base, I ran update.packages(). Four previously installed packages failed to update: Matrix (0.95-5 to 0.97-4) gam (0.93 to 0.94) lme4 (0.95-3 to 0.96-1) mgcv (1.3-1 to 1.3-4) In the case of Matrix, gam and mgcv I get the message: [long path]/ld: cannot find -lf77blas In the case of lme4 the messages are: ** preparing package for lazy loading Error in setMethod("coef", signature(object = "lmList"), function(object, : no existing definition for function 'coef' Error: unable to load R code in package 'lme4' Execution...

If I configure in R-patched and R-devel, with the same options to configure, then R-patched says checking for ATL_xerbla in -latlas... yes checking for cblas_dgemm in -lcblas... yes checking for dgemm_ in -lf77blas... yes which R-devel says checking for ATL_xerbla in -latlas... yes checking for cblas_dgemm in -lcblas... yes checking for dgemm in -lf77blas... no This is on the same computer and using the same libraries. Observe in R-patched we check for dgemm_ and in R-devel for dgemm. Is that what is inten...

...alling *source* package `KernSmooth' ... [snip] cc -I/sw/lib/R/include -I/sw/include -fno-common -g -O2 -c sstdiag.c -o sstdiag.o cc -bundle -bundle_loader /sw/lib/R/bin/R.bin -o KernSmooth.so blkest.o cp.o dgedi.o dgefa.o dgesl.o linbin.o linbin2D.o locpoly.o rlbin.o sdiag.o sstdiag.o -lf77blas -lcblas -latlas -L/usr/local/lib -lf2c -lm /usr/bin/ld: can't locate file for: -lf77blas make: *** [KernSmooth.so] Error 1 ERROR: compilation failed for package `KernSmooth' Installing *source* package `cluster' ... [snip] cc -bundle -bundle_loader /sw/lib/R/bin/R.bin -o cluster.so c...

...td=gnu99 -O3 -pipe -g -c lmer.c -o lmer.o gcc -I/usr/share/R/include -I"/usr/lib/R/library/Matrix/include" -I"/usr/lib/R/library/stats/include" -fpic -std=gnu99 -O3 -pipe -g -c local_stubs.c -o local_stubs.o gcc -shared -o lme4.so init.o lmer.o local_stubs.o -llapack -lf77blas -latlas -lgfortran -lm -L/usr/lib/R/lib -lR /usr/bin/ld: cannot find -lf77blas /usr/bin/ld: cannot find -latlas collect2: ld returned 1 exit status make: *** [lme4.so] Error 1 ERROR: compilation failed for package lme4 * removing /usr/local/lib/R/site-library/lme4 ---------BUT [ 48 ] <wow>...