search for: lf77blas

I just upgraded to Ubuntu 8.10 (i386) from 8.04. After the upgrade, I ran update.packages(.libPaths()[1]) in R to get the packages installed from source up to date too. Unfortunately, two packages could not be updated: mclust and mboost. In both cases, the error I got mentioned lf77blas. Here's the output for mboost: * Installing *source* package 'mboost' ... ** libs gcc -std=gnu99 -I/usr/share/R/include -fpic -g -O2 -c mboost.c -o mboost.o gcc -std=gnu99 -shared -o mboost.so mboost.o -lf77blas -latlas -lgfortran -lm -L/usr/lib/R/lib -lR /usr/bin/ld: cannot fi...

...In function 'main': conftest.c:189: warning: implicit declaration of function 'dgemm_' /usr/bin/ld: warning: libgfortran.so.3, needed by /opt/acml4.3.0/gfortran64/lib/libacml.so, not found (try using -rpath or -rpath-link) Try ./configure --with-blas="-L/usr/lib64/atlas -lf77blas -latlas" I get the following configure:37199: checking for dgemm_ in -L/usr/lib64/atlas -lf77blas -latlas configure:37230: gcc -std=gnu99 -o conftest -g -O2 -I/usr/local/include -L/usr/local/lib64 conftest.c -L/usr/lib64/atlas -lf77blas -latlas -lg$ conftest.c: In function 'main...

If I configure in R-patched and R-devel, with the same options to configure, then R-patched says checking for ATL_xerbla in -latlas... yes checking for cblas_dgemm in -lcblas... yes checking for dgemm_ in -lf77blas... yes which R-devel says checking for ATL_xerbla in -latlas... yes checking for cblas_dgemm in -lcblas... yes checking for dgemm in -lf77blas... no This is on the same computer and using the same libraries. Observe in R-patched we check for dgemm_ and in R-devel for dgemm. Is that what is inten...

...so) are sitting in the folder "/usr/local/atlas/lib" (together with the static .a versions and some other files. Following the R installation manual, I used the following configure string: ./configure --enable-R-shlib --enable-BLAS-shlib --with-blas="-L/usr/local/atlas/lib -latlas -lf77blas" --with-lapack="-L/usr/local/atlas/lib -llapack -lcblas" CFLAGS='-O3 -pipe -march=native' CXXFLAGS='-O3 -pipe -march=native' R_PAPERSIZE='letter' The configuration routine returns the following errors: checking for cblas_cdotu_sub in vecLib framework... no c...

Hello. I know almost nothing about Linux, so I apologize if the answer to this is obvious. I am trying to compile R with ATLAS (successfully compiled 3.9.24 on Ubuntu 10.04 64 bit). I configured with: ./configure --enable-R-shlib --enable-BLAS-shlib --with-blas="-L/usr/local/atlas/lib -lf77blas -latlas" --with-lapack="-L/usr/local/atlaslib -llapack -lcblas" --with-x and I get this error (from config.log): configure:28566: checking for dgemm_ in -L/usr/local/atlas/lib -lf77blas -latlas configure:28587: gcc -std=gnu99 -o conftest -g -O2 -fpic -I/usr/local/include -L/usr/lo...

Hello. I know almost nothing about Linux, so I apologize if the answer to this is obvious. I am trying to compile R with ATLAS (successfully compiled 3.9.24 on Ubuntu 10.04 64 bit). I configured with: ./configure --enable-R-shlib --enable-BLAS-shlib --with-blas="-L/usr/local/atlas/lib -lf77blas -latlas" --with-lapack="-L/usr/local/atlaslib -llapack -lcblas" --with-x and I get this error (from config.log): configure:28566: checking for dgemm_ in -L/usr/local/atlas/lib -lf77blas -latlas configure:28587: gcc -std=gnu99 -o conftest -g -O2 -fpic -I/usr/local/include -L/usr/lo...

Hello, After reinstalling the whole OS and R as well, I tried to update.packages() and get the follwing error message: concerning the mgcv update: atlas2-base is installed and blas as well (on debian). I haven't found lf77blas, I assume it's a library or something similar associated with blas. any suggestion how to solve that, thanks Martin * Installing *source* package 'cluster' ... ** libs gcc -I/usr/lib/R/include -D__NO_MATH_INLINES -mieee-fp -fPIC -g -O2 -c clara.c -o clara.o g77 -mieee-fp -fPIC...

...ly.f -o locpoly.o g77 -mieee-fp -fPIC -g -O2 -c rlbin.f -o rlbin.o g77 -mieee-fp -fPIC -g -O2 -c sdiag.f -o sdiag.o g77 -mieee-fp -fPIC -g -O2 -c sstdiag.f -o sstdiag.o gcc -shared -o KernSmooth.so blkest.o cp.o dgedi.o dgefa.o dgesl.o linbin2D.o linbin.o locpoly.o rlbin.o sdiag.o sstdiag.o -lf77blas -latlas -L/usr/lib/gcc-lib/i486-linux/3.3.2 -L/usr/lib/gcc-lib/i486-linux/3.3.2/../../.. -lfrtbegin -lg2c-pic -lm -lgcc_s -L/usr/lib/R/bin -lR /usr/bin/ld: cannot find -lf77blas collect2: ld returned 1 exit status make: *** [KernSmooth.so] Error 1 ERROR: compilation failed for package 'KernSmoo...

...-std=gnu99 -O3 -pipe -g -c lmer.c -o lmer.o gcc -I/usr/share/R/include -I"/usr/lib/R/library/Matrix/include" -I"/usr/lib/R/library/stats/include" -fpic -std=gnu99 -O3 -pipe -g -c local_stubs.c -o local_stubs.o gcc -shared -o lme4.so init.o lmer.o local_stubs.o -llapack -lf77blas -latlas -lgfortran -lm -L/usr/lib/R/lib -lR /usr/bin/ld: cannot find -lf77blas /usr/bin/ld: cannot find -latlas collect2: ld returned 1 exit status make: *** [lme4.so] Error 1 ERROR: compilation failed for package ?lme4? * removing ?/home/bates/R/i686-pc-linux-gnu-library/2.12/lme4? The thing that...

...there was a > > lot of compilation before this): > > > > cp R.dll ../../bin/ > > -------- Building ../../bin/Rblas.dll -------- > > gcc -shared -s -o ../../bin/Rblas.dll blas00.o dllversion.o Rblas.def \ > > -L../../bin -lR -L"C:/WinNT_ATHLONSSE2" -lf77blas -latlas > > What version of R is this? I get > > -------- Building ../../../bin/Rblas.dll -------- > gcc -shared -o ../../../bin/Rblas.dll blas00.o > ../../gnuwin32/dllversion.o Rbl > as.def \ > -L../../../bin -lR -L"/R/ATLAS/lib/WinNT_PM" -lf77blas -latlas...

...version 2.12.0 (2010-10-15) in accordance with the instructions on the CRAN site. All went well until I started to install the additional packages I use and found multiple cases of (e.g. for lme4) of the following compilation error: gcc -shared -o lme4.so init.o lmer.o local_stubs.o -llapack -lf77blas -latlas -lgfortran -lm -L/usr/lib/R/lib -lR /usr/bin/ld: cannot find -lf77blas /usr/bin/ld: cannot find -latlas ---------BUT [ 48 ] <wow> (ron) /usr/bin/R CMD config LAPACK_LIBS -llapack ---------AND <wow> (ron) dpkg -l | grep lapack ii liblapack-dev...

...ferent on the 32-bit and 64-bit Ubuntu packages maverick/r-base-core_2.12.1-1maverick0_i386.deb and the corresponding 64-bit version. The Make variable BLAS_LIBS is defined as -lblas on the 64-bit system $ egrep BLAS /etc/R/Makeconf BLAS_LIBS = -lblas but on the 32-bit system it is defined as -lf77blas -latlas

...std=gnu99 -O3 -pipe -g -c lmer.c -o lmer.o gcc -I/usr/share/R/include -I"/usr/lib/R/library/Matrix/include" -I"/usr/lib/R/library/stats/include" -fpic -std=gnu99 -O3 -pipe -g -c local_stubs.c -o local_stubs.o gcc -shared -o lme4.so init.o lmer.o local_stubs.o -llapack -lf77blas -latlas -lgfortran -lm -L/usr/lib/R/lib -lR /usr/bin/ld: cannot find -lf77blas /usr/bin/ld: cannot find -latlas collect2: ld returned 1 exit status make: *** [lme4.so] Error 1 ERROR: compilation failed for package lme4 * removing /usr/local/lib/R/site-library/lme4 ---------The /usr/bin/ld: cannot...

...talling *source* package `KernSmooth' ... [snip] cc -I/sw/lib/R/include -I/sw/include -fno-common -g -O2 -c sstdiag.c -o sstdiag.o cc -bundle -bundle_loader /sw/lib/R/bin/R.bin -o KernSmooth.so blkest.o cp.o dgedi.o dgefa.o dgesl.o linbin.o linbin2D.o locpoly.o rlbin.o sdiag.o sstdiag.o -lf77blas -lcblas -latlas -L/usr/local/lib -lf2c -lm /usr/bin/ld: can't locate file for: -lf77blas make: *** [KernSmooth.so] Error 1 ERROR: compilation failed for package `KernSmooth' Installing *source* package `cluster' ... [snip] cc -bundle -bundle_loader /sw/lib/R/bin/R.bin -o cluster.so c...

...able on CRAN. After upgrading r-base, I ran update.packages(). Four previously installed packages failed to update: Matrix (0.95-5 to 0.97-4) gam (0.93 to 0.94) lme4 (0.95-3 to 0.96-1) mgcv (1.3-1 to 1.3-4) In the case of Matrix, gam and mgcv I get the message: [long path]/ld: cannot find -lf77blas In the case of lme4 the messages are: ** preparing package for lazy loading Error in setMethod("coef", signature(object = "lmList"), function(object, : no existing definition for function 'coef' Error: unable to load R code in package 'lme4' Execution...

...lowing error message (I'm posting only the final part, there was a lot of compilation before this): cp R.dll ../../bin/ -------- Building ../../bin/Rblas.dll -------- gcc -shared -s -o ../../bin/Rblas.dll blas00.o dllversion.o Rblas.def \ -L../../bin -lR -L"C:/WinNT_ATHLONSSE2" -lf77blas -latlas C:/WinNT_ATHLONSSE2/libf77blas.a(xerbla.o):xerbla.f:(.text+0xb): undefined refer ence to `s_wsfe' C:/WinNT_ATHLONSSE2/libf77blas.a(xerbla.o):xerbla.f:(.text+0x27): undefined refe rence to `do_fio' C:/WinNT_ATHLONSSE2/libf77blas.a(xerbla.o):xerbla.f:(.text+0x43): undefined refe rence...

...owed one answer in some post and use this: ./configure --with-prefix=/home/user/R-2.2.1 --with-readline=no It successfully configured but I encountered another problem while make: gcc -shared -L/usr/local/lib64 -o libRlapack.so dlamc.lo dlapack0.lo dlapack1.lo dlapack2.lo dlapack3.lo cmplx.lo -lf77blas -latlas -lg2c -lm -lgcc_s /usr/bin/ld: /usr/lib/gcc/x86_64-redhat-linux/3.4.4/../../../../lib64/libf77blas.a(xerbla.o): relocation R_X86_64_32 against `a local symbol' can not be used when making a shared object; recompile with -fPIC /usr/lib/gcc/x86_64-redhat-linux/3.4.4/../../../../lib64/...

...std=gnu99 -O3 -pipe -g -c lmer.c -o lmer.o gcc -I/usr/share/R/include -I"/usr/lib/R/library/Matrix/include" -I"/usr/lib/R/library/stats/include" -fpic -std=gnu99 -O3 -pipe -g -c local_stubs.c -o local_stubs.o gcc -shared -o lme4.so init.o lmer.o local_stubs.o -llapack -lf77blas -latlas -lgfortran -lm -L/usr/lib/R/lib -lR /usr/bin/ld: cannot find -lf77blas /usr/bin/ld: cannot find -latlas collect2: ld returned 1 exit status make: *** [lme4.so] Error 1 ERROR: compilation failed for package lme4 * removing /usr/local/lib/R/site-library/lme4 ---------BUT [ 48 ] <wow>...

...rwin kernel 7.3.0). The error msg starts as follows, and has several more errors. gcc -dynamiclib -L/sw/lib -L/usr/local/lib -install_name /Library/Frameworks/R.f ramework/Versions/1.9.0/Resources/bin/libRlapack.dylib -o libRlapack.dylib dlapa ck0.lo dlapack1.lo dlapack2.lo dlapack3.lo cmplx.lo -lf77blas -latlas -L/sw/lib -L/usr/local/lib -L/sw/lib/gcc/powerpc-apple-darwin7.2.0/3.4 -L/sw/lib/gcc/powe rpc-apple-darwin7.2.0/3.4/../../.. -lfrtbegin -lg2c -lSystem ld: common symbols not allowed with MH_DYLIB output format with the -multi_modul e option /sw/lib/libg2c.a(err.o) definition of common _f__...

...followed the instructions on this message, https://stat.ethz.ch/pipermail/r-devel/2004-February/028966.html, to convert static libraries to dynamic libraries. However, when I tried to configure R-devel, I got the following error messages in config.log: configure:33172: checking for sgemm_ in -lf77blas configure:33210: /usr/pgi/linux86-64/6.0/bin/pgcc -o conftest -g -O2 -mieee-fp -I/usr/pgi/linux86-64/6.0/include -I/usr/pgi/l\ inux86-64/6.0/include/CC -L/usr/pgi/linux86-64/6.0/libso -L/usr/lib64 -L/usr/local/lib64 conftest.c -lf77blas -latlas -lpgftn\ rtl -lnspgc -lpgc -lm -ldl -lm >&...