search for: epigenetics

...in the Suggests: of the DESCRIPTION file (it's require()d elsewhere). I'm trying to avoid putting packages in Depends: , so my package loads fast. Any tips of what I'm not understanding properly ? Thanks. -------------------------------------- Dario Strbenac Research Assistant Cancer Epigenetics Garvan Institute of Medical Research Darlinghurst NSW 2010 Australia

...d looking at the sessionInfo shows the package name was properly processed. Is this a spurious warning ? I'm using: R version 2.13.0 (2011-04-13) Platform: x86_64-unknown-linux-gnu (64-bit) (actually Ubuntu 10.10) -------------------------------------- Dario Strbenac Research Assistant Cancer Epigenetics Garvan Institute of Medical Research Darlinghurst NSW 2010 Australia

...\item{rs}{jjj} \item{organism}{ghi} \item{seqLen}{def} \item{do.warn}{abc} \item{...}{xyz} } \details{ Details. } \value{ Text here. } \author{A Person} \examples{ #See the manual } Thanks, Dario. -------------------------------------- Dario Strbenac Research Assistant Cancer Epigenetics Garvan Institute of Medical Research Darlinghurst NSW 2010 Australia

...\item{rs}{jjj} \item{organism}{ghi} \item{seqLen}{def} \item{do.warn}{abc} \item{...}{xyz} } \details{ Details. } \value{ Text here. } \author{A Person} \examples{ #See the manual } Thanks, Dario. -------------------------------------- Dario Strbenac Research Assistant Cancer Epigenetics Garvan Institute of Medical Research Darlinghurst NSW 2010 Australia

...s, colour = "Blue") { cat(rs*100, colour) }) setMethod("myFun", "character", function(cs, colour = "Red") { cat(cs, colour) }) Thanks for any tips, Dario. -------------------------------------- Dario Strbenac Research Assistant Cancer Epigenetics Garvan Institute of Medical Research Darlinghurst NSW 2010 Australia

...ill gave me the same error. Is this a bug in agnes() ? It doesn't seem to fulfil the claim made by its documentation. The matrix I'm using can be obtained here : http://129.94.136.7/file_dump/dario/iMatrix.obj -------------------------------------- Dario Strbenac Research Assistant Cancer Epigenetics Garvan Institute of Medical Research Darlinghurst NSW 2010 Australia

...y code ? The manual also says "In particular, large packages providing ?only? data for examples or vignettes should be listed in ?Suggests? rather than ?Depends? in order to make lean installations possible." -------------------------------------- Dario Strbenac Research Assistant Cancer Epigenetics Garvan Institute of Medical Research Darlinghurst NSW 2010 Australia

...L There is no error message returned, and the code runs perfectly fine in lapply. I am on a MacBook 15 (2016) running MacOS 10.14.6 (Mojave) and R version 3.6.2. This bug could not be reproduced on my Ubuntu 19.10 running R 3.6.1. Kind regards, Shian Su ---- Shian Su PhD Student, Ritchie Lab 6W, Epigenetics and Development Walter & Eliza Hall Institute of Medical Research 1G Royal Parade, Parkville VIC 3052, Australia _______________________________________________ The information in this email is confidential and intend...{{dropped:15}}

...here a way to flatten all the dot plots and graphics, so that they don't take a long time to load on a slow computer in Adobe Reader, without using external programs outside of R ? Thanks, Dario. ------------------------------------------------- Dario Strbenac Research Assistant Cancer Epigenetics Garvan Institute of Medical Research Darlinghurst NSW 2010 Australia

...0 16671 The matrix of observations can be found at : http://129.94.136.7/file_dump/dario/all.obj I'm using R version 2.13.0 (2011-04-13) on Platform: x86_64-unknown-linux-gnu (64-bit) and have cluster_1.13.3. -------------------------------------- Dario Strbenac Research Assistant Cancer Epigenetics Garvan Institute of Medical Research Darlinghurst NSW 2010 Australia

...ng workspace 4: exit R saving workspace Selection: 3 Error: no graphics system to unregister > > q("no", runLast = FALSE) Error in q("no", runLast = FALSE) : no graphics system to unregister -------------------------------------- Dario Strbenac Research Assistant Cancer Epigenetics Garvan Institute of Medical Research Darlinghurst NSW 2010 Australia

...quot;, function(x, y, z, ...) { x; UseMethod("analyse") } ) setGeneric("analyse") setMethod("analyse", "GRangesList", function(x, y, a, b, c) { x; } ) Thanks, Dario. -------------------------------------- Dario Strbenac Research Assistant Cancer Epigenetics Garvan Institute of Medical Research Darlinghurst NSW 2010 Australia

...at code chunk. > load("/home/darstr/r_env_cache/2.11.0/AbsMeth_5/ac047940aaa9cf1a1ec09f1628b13381.RData") > ls() [1] "cacheEnv" "DEPS" "SESSION" What can I try next ? -------------------------------------- Dario Strbenac Research Assistant Cancer Epigenetics Garvan Institute of Medical Research Darlinghurst NSW 2010 Australia

...os.col = 6)) plot.new() par(plt = gridPLT(), new = TRUE) randData <- lapply(1:4, function(x) sample(10, 10, TRUE)) boxplot(randData, horizontal = TRUE) dev.off() I'm using gridBase_0.4-3. Thanks, Dario. -------------------------------------- Dario Strbenac Research Assistant Cancer Epigenetics Garvan Institute of Medical Research Darlinghurst NSW 2010 Australia

...s be S4 dispatchable on. But R 2.13 wants me to document this class that I don't own: * checking for missing documentation entries ... WARNING Undocumented S4 classes: AffymetrixCelSet Is this truly necessary ? -------------------------------------- Dario Strbenac Research Assistant Cancer Epigenetics Garvan Institute of Medical Research Darlinghurst NSW 2010 Australia

...tputs from inside my function. exiting from: enrichmentPlot(samples.list, 300) I have the current 2.13.0 version of R. I'm sure I've done something wrong, I just can't figure out what. Thanks for any help. -------------------------------------- Dario Strbenac Research Assistant Cancer Epigenetics Garvan Institute of Medical Research Darlinghurst NSW 2010 Australia

...L There is no error message returned, and the code runs perfectly fine in lapply. I am on a MacBook 15 (2016) running MacOS 10.14.6 (Mojave) and R version 3.6.2. This bug could not be reproduced on my Ubuntu 19.10 running R 3.6.1. Kind regards, Shian Su ---- Shian Su PhD Student, Ritchie Lab 6W, Epigenetics and Development Walter & Eliza Hall Institute of Medical Research 1G Royal Parade, Parkville VIC 3052, Australia _______________________________________________ The information in this email is confidential and intend...{{dropped:26}}

...nd the code runs perfectly fine in lapply. > > I am on a MacBook 15 (2016) running MacOS 10.14.6 (Mojave) and R version 3.6.2. This bug could not be reproduced on my Ubuntu 19.10 running R 3.6.1. > > Kind regards, > Shian Su > ---- > Shian Su > PhD Student, Ritchie Lab 6W, Epigenetics and Development > Walter & Eliza Hall Institute of Medical Research > 1G Royal Parade, Parkville VIC 3052, Australia > > > _______________________________________________ > > The information in this email is confidential and =\ i...{{dropped:8}}

...es and layout those outputs ? Here's a minimal example : myplot <- function() { layout(matrix(1:2, nrow=1), widths = c(1, 1)) plot(1:10) plot(10:1) } layout(matrix(1:2), heights = c(1, 2)) myplot() myplot() -------------------------------------- Dario Strbenac Research Assistant Cancer Epigenetics Garvan Institute of Medical Research Darlinghurst NSW 2010 Australia

...in the error exists and is readable. $ ls -l /usr/local/lib64/R/library/lattice/libs/lattice.so -rwxr-xr-x 1 root root 31813 2011-06-07 13:17 /usr/local/lib64/R/library/lattice/libs/lattice.so What should I try next ? -------------------------------------- Dario Strbenac Research Assistant Cancer Epigenetics Garvan Institute of Medical Research Darlinghurst NSW 2010 Australia