search for: dssp

hi all I am using r (2.15.2) in windows 7 32bit I want to execute an external program from r console. the program is a command line program which needs the following format to start C:/Users/.../dssp-2.0.4-win32.exe -i data_1.txt -o data_1.dssp I used the system command as: system ('C:/Users/.../dssp-2.0.4-win32.exe -i data.txt -o data.dssp') it worked. Now I want to use the program on a list of files, so for that I used a for loop and sprintf...

...tart()' for an HTML browser interface to help. Type 'q()' to quit R. Loading ~/.Rprofile... Currently viewed PATH: /opt/local/bin:/opt/local/sbin:/sw/bin:/sw/sbin:/Library/Frameworks/Python.framework/Versions/Current/bin:/usr/local/soylatte16-i386/bin:/Applications/muscle:/Applications/dssp:/opt/local/include:/Library/Frameworks/GDAL.framework/Programs:/Library/Frameworks/PROJ.framework/Programs:/sw/include/wx-2.8:/Library/Frameworks/PROJ.framework/Programs:_njm:/opt/git/bin:/Users/nick/gtk/inst/bin:/Users/nick/bin:/usr/local/mysql/bin:/opt/local/bin:/opt/local/sbin:/bioinformatics/nc...

...ot able to use the programs on all the files for (k in 1:10){ x=read.table ("data.txt") xx=x[1:5, ] xxx=paste0("data_",k,"txt") write.table (xx,xxx,quote =FALSE, sep = "\t",row.names = FALSE, col.names = FALSE) system ('dssp.exe -i xxx -o xxx.out) } Best Regards,

Dear all, Does any one knows why should I get the following error message, when trying to do a simple data.frame?? DataF<-data.frame(Subject,BiomR,Spp,Capas,Litter,Herbs,LitterD,MaxCanH,DDifS p,DSSp,Slope, CanDens,NearestSp) Erro em data.frame(Subject, BiomR, Spp, Capas, Litter, Herbs, LitterD, : arguments imply differing number of rows: 202, 0 The data I am using is: Subject BiomR Spp Capas Litter Herbs LitterD MaxCanH DDifSp DSSp Slope CanDens NearestSp...

...L, > type='source', > + > configure.args="--with-geos-config=/usr/local/bin/geos-config") > WARNING: ignoring environment value of R_HOME > Loading ~/.Rprofile... > Currently viewed PATH: > /usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/usr/texbin:/Applications/dssp:/Library/Frameworks/PROJ.framework/:/Library/Frameworks/PROJ.framework/Programs:/Library/Frameworks/PROJ.framework/Versions/4.6/Headers:/Library/Frameworks/GDAL.framework/Versions/1.6/Programs:/usr/texbin:/Applications/dssp:/Library/Frameworks/PROJ.framework/:/Library/Frameworks/PROJ.framework/Prog...

Full_Name: Jean-Pierre Müller Version: 162 OS: Mac OS (carbon) Submission from: (NULL) (130.223.101.43) Encodings valid only in rwading files? The following give identical output files. "ascii" <- c( "\040","\041","\042","\043","\044","\045","\046","\047", # 040-047

https://bugs.freedesktop.org/show_bug.cgi?id=93629 Bug ID: 93629 Summary: [NVE6] complete system freeze, PGRAPH engine fault on channel 2, SCHED_ERROR [ CTXSW_TIMEOUT ] Product: xorg Version: unspecified Hardware: x86-64 (AMD64) OS: Linux (All) Status: NEW Severity: normal

......HPTC......A 0180: 43 50 48 0a de 08 41 53 53 42 00 08 41 4f 54 42 CPH...ASSB..AOTB 0190: 00 08 41 41 58 42 00 08 50 45 48 50 01 08 53 48 ..AAXB..PEHP..SH 01a0: 50 43 01 08 50 45 50 4d 01 08 50 45 45 52 01 08 PC..PEPM..PEER.. 01b0: 50 45 43 53 01 08 44 53 53 50 00 08 46 48 50 50 PECS..DSSP..FHPP 01c0: 00 08 46 4d 42 4c 01 08 46 44 54 50 0a 02 08 46 ..FMBL..FDTP...F 01d0: 55 50 53 0a 03 08 42 53 48 5f 00 08 42 45 4c 5f UPS...BSH_..BEL_ 01e0: 01 08 42 45 48 5f 0a 02 08 42 52 48 5f 0a 03 08 ..BEH_...BRH_... 01f0: 42 54 46 5f 0a 04 08 42 48 43 5f 0a 05 08 42 59 BTF_...BHC_......

Hello, Is file("out.txt", open="wt", encoding=ISOLatin1) (resp: MacRoman, WinAnsi) broken/unimplemented ? I am trying: zz <- file("out.txt", open="wt", encoding=ISOLatin1) cat(ASCII,file = zz, sep="\n") close(zz) on R162 for MacOs (carbon). Thanks. -- ------------------------------------------------------------------------------ Jean-Pierre

Hello, Can someone confirm that "read.spss" doesn't work with usual (old) mac paths ("disk:dir:dir:file"), but only with *nix path (Volumes/disk/...)? rm171 (carbon) - MacOSX 10.2.6 Thanks. -- ------------------------------------------------------------------------------ Jean-Pierre Muller SSP / UNIL / BFSH2 / CH-1015 Lausanne