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Hi All, Users have contacted me because they can not build MCMCglmm from source. All are using R 3.3.0 on various machines with different compilers gcc (Ubuntu 5.4.0-6ubuntu1~16.04.2) 5.4.0 g++ (Ubuntu 4.8.4-2ubuntu1~14.04.3) 4.8.4 Mac OS X El Capitan (version/compiler unspecified) The issue seems to be with mixing C/C++ with the repeated error: /usr/include/c++/5/bits/cpp_type_traits.h:118:3:

This looks like the result of including a C++ system header inside an extern "C" block. There is no evidence of this happening in the current version 2.22.1. However, it did happen in the previous version 2.22 via the chain of inclusions: MCMCglmmcc.h -> cs.h -> R.h -> various C++ system headers See Writing R Extensions P 108. I would check that the people reporting this bug

I am trying to work through the usage of thinlto for distributed builds. Here is the simple thinlto usage, just add -flto=thin everywhere, easy: clang++ -flto=thin -O3 -c -o CreateWay_.o -DSPEC_CPU -DNDEBUG -DSPEC_CPU_LITTLE_ENDIAN -Wno-dangling-else CreateWay_.cpp clang++ -flto=thin -O3 -c -o Places_.o -DSPEC_CPU -DNDEBUG -DSPEC_CPU_LITTLE_ENDIAN

Jarrod, On 19 August 2016 at 04:43, Jarrod Hadfield wrote: | Hi All, | | Users have contacted me because they can not build MCMCglmm from source. All are using R 3.3.0 on various machines with different compilers | | gcc (Ubuntu 5.4.0-6ubuntu1~16.04.2) 5.4.0 | g++ (Ubuntu 4.8.4-2ubuntu1~14.04.3) 4.8.4 | Mac OS X El Capitan (version/compiler unspecified) | | The issue seems to be with mixing

Thanks Teresa Yes it is astar, happen to send a tar of the sources but they are just copies from the spec distribution The ld command is: GNU ld (GNU Binutils) 2.29.1 Thanks for the guidance on path names. The prefix-replace just effects the string written to the object files right? So we could post-process that file with other tools as well, correct? Thanks again --david From: Teresa Johnson

Dear all, I was willing to use the library "rgl" to plot some 3D graphics, but unfortunately, I wan't able to instal the library. The error message is below. I would be very grateful if you could give me any clues about how I can solve this. Below you will find : - installation from binaries - installation from sources - sessionInfo() Bests, -- Guillaume Meurice - PhD Plateforme

On Fri, Jul 20, 2001 at 03:01:54PM -0700, Josh Coalson wrote: > --- Matt Zimmerman <mdz@debian.org> wrote: > > > > automake will include ltmain.sh in the source distribution, so it > > should be > > used even if it isn't installed on the build system. In fact, it > > seems to > > always use the distributed version, and not the installed one

Fails with gold too: Library-native.o:Library.cpp:regway: error: undefined reference to 'vtable for regwayobj' /home/dcallahan/fbsource/fbcode/third-party-buck/platform007/tools/binutils/bin/gold/ld: the vtable symbol may be undefined because the class is missing its key function clang-8: error: linker command failed with exit code 1 (use -v to see invocation) From: Teresa Johnson

> OK, that worked. > > I checked in your patch to make a static libFLAC-asm.a and > I moved @XMMS_LIBS@ to the end of ...LIBADD. Matt and Ben, > can you try the latest CVS to see if it works for you now? It doesn't work for me. Looks like libtool decided not to link libFLAC-asm.a into libFLAC. Here's the output: Making all in src gmake[1]: Entering directory

I'm trying to install the rdatamarket package. I did an install.packages('rdatamarket') command but got an error about half way through the install as follows: * installing *source* package ?RCurl? ... checking for curl-config... no Cannot find curl-config ERROR: configuration failed for package ?RCurl? The install continued after the error but looks like it was completed. I'm

hello! Today I tried to compile the new FLAC 0.8 sourcecode on my SuSE Linux 7.1 machine and failed. Below is the output of "make" and "configure". I hope the information is enough that somebody can help me to compile the source. Thanks a lot. PS: A lot of thanks to all developers of FLAC. Its very useful to me!! ------------------------------------------------------ This

Hi, folks. I was wondering if any of you could point me in the right direction. Using R 3.3.3 (and later), on an IBM Power LPAR, Red Hat 7 PPC64le, markdown build fails as below. > install.packages("markdown") trying URL 'https://cloud.r-project.org/src/contrib/markdown_0.8.tar.gz' Content type 'unknown' length 80583 bytes (78 KB)

hello all i am having a problem in compiling openh323. [root@kamran openh323]# ./configure checking for g++... g++ checking for C++ compiler default output... a.out checking whether the C++ compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes

Dear R-helpers, Christoph (author of phyloclim) and Luke (author of tkrplot), I would like to get your helps on installing of phyloclim in Ubuntu linux. It seems a package named 'tkrplot' could not be installed at firstly, then packages depends on it could not be installed latter. As I have tested, installation of phyloclim works smoothly in Mac. I attempted to install these packages in

Hello, I am getting a fresh CentOS 6.7 machine set up with all of the goodies for R 3.2.3, including dplyr package. I am unable to successfully install it. Below I show the failed installation using utils::install.packages() and then again using devtools::install_github(). Each yields an error similar to the other but not quite exactly the same - the error messages sail right over my head. I

Greetings, I am learning R My machine has these; CPU: 3cores amd64 OS pure-64bit CBLFS liux compiled from sources (kernel 3.2.1, gcc-4.6.2 R-2.15 When I compiled R the compiler spewed out lines like these:- make[3]: Entering directory `/tmp/RtmpiHdDJy/R.INSTALL472339eeb23a/mgcv/src' gcc -m64 -std=gnu99 -I/home/Rman/R-2.15.0/include -DNDEBUG - I/usr/local/atlas/include

You normally see these errors when compiling on a vm that has very little memory. Hadley On Tue, Apr 19, 2016 at 2:47 PM, Ben Tupper <btupper at bigelow.org> wrote: > Hello, > > I am getting a fresh CentOS 6.7 machine set up with all of the goodies for R 3.2.3, including dplyr package. I am unable to successfully install it. Below I show the failed installation using

Hi, I'm encountering trouble compiling caTools_1.17.1.tar.gz and e1071_1.6-4.tar.gz on a Linux system using the Intel compiler suite. 14 other packages I generally use installed without any trouble. I notice both of these trouble packages have a C++ component, so I wonder if that might be the issue. Below, there's information on my platform, compiler, and some diagnostic output showing

Hi friends, I was trying to install RJSONIO in Ubuntu10.04 LTS but unfortunately ends up with following error. trying URL 'http://stat.ethz.ch/CRAN/src/contrib/RJSONIO_0.98-1.tar.gz' Content type 'application/x-gzip' length 1150673 bytes (1.1 Mb) opened URL ================================================== downloaded 1.1 Mb * installing *source* package ‘RJSONIO’ ... Trying to

Hi I am new to Cygwin and Linux. I installed R under Cygwin as part of the setup I chose "All" during installation, for all packages. So I have the FULL installlation of cygwin up and running, including gfortran. *Under Cygwin, how do I check and configure the path to the various libraries?* I am trying below command and it says, cannot find "lgfortran" But I have installed