search for: deeply

...ackage: testpkg Loading required package: testpkg Loading required package: testpkg Loading required package: testpkg Loading required package: testpkg Loading required package: testpkg Loading required package: testpkg Loading required package: testpkg Error during wrapup: evaluation is nested too deeply: infinite recursion? Loading required package: testpkg Error in options(x) : evaluation is nested too deeply: infinite recursion? Error: evaluation is nested too deeply: infinite recursion? Error: evaluation is nested too deeply: infinite recursion? Error: evaluation is nested too deeply: infinite...

Hi, I am processing tick data and my code has stopped working as I have increased the size of data being processed. Now I am receiving error for basic tasks in RConsole: > a = c(1:1000) Error: evaluation nested too deeply: infinite recursion / options(expressions=)? My R code worked fine with 50 stocks and 500,000 rows per stock, but when I increased this to 50 stocks and 5,000,000 rows per stock the code stopped halfway through with the above error message (Error: Evaluation nested too deeply.....). Now I am gett...

...did I just mess something up? I've uninstalled and reinstalled R but continue to receive the same errors. The errors are shown below: R : Copyright 2001, The R Development Core Team Version 1.3.0 (2001-06-22) > > help(sum) Error in as.double.default(U) : evaluation is nested too deeply: infinite recursion? > lm(rnorm(100)~rnorm(100)) Error in as.vector(data) : evaluation is nested too deeply: infinite recursion? > Thank you very much for considering my problem. Jason

Hi netters, I have a matrix X of the size (1000,100). The values are from -3 to +3. When I tried heatmap(X, distfun=function(c),dist(c,method="bin"),hclustfun=function(m),hclust(m,method="average")) I got the error message: Error: evaluation nested too deeply: infinite recursion / options(expressions=)? However, if I used default parameters for distfunction: heatmap(X, hclustfun=function(m),hclust(m,method="average")) there is no error messages at all. But the problem is that I have to use binary method in my disfunction. How can I resolve...

I get the error Error : evaluation nested too deeply: infinite recursion / options(expressions=)? during a 'R CMD check ...' on one of my packages. The reason seems to be that this package is mutually dependent on another one (i.e. the DESCRIPTION files of package A lists package B under "Depends" and vice versa). this might be ba...

...of Johan> genes and the columns are my slides. I do the Johan> following and get the following error message: >> heatmap(Matrix[,],Rowv=as.dendrogram(gclus),Colv=as.dendrogram(sclus),col=rbg) Johan> Error in match.fun(FUN) : evaluation is Johan> nested too deeply: infinite recursion? Error: Johan> evaluation is nested too deeply: infinite recursion? The problem happens when trying to plot a large dendrogram. The "dendrogam" class is implemented as an S-level "tree", i.e., a nested list and plot.dendrogram() uses recursion for p...

Hi all, Why I am getting, Error: evaluation nested too deeply: infinite recursion / options(expressions=)? Thanks in advance! func <- Vectorize(function(x, a, sad, trunc=0, ...) { result <- function(x) { f1 <- function(n) { dcom <- paste("d", deparse(substitute(sad)), sep="") dots <- c(as.name("n&quot...

Hi guys, I have a code in R and it was work well but when I decrease the epsilon value (indicated in the code) , then I am getting this error Error: evaluation nested too deeply: infinite recursion / options(expressions=)? any help please y = 6.8; w = 7.4; z = 5.7; muy = 7; muw = 7; muz = 6; sigmay = 0.8; sigmaz = 0.76; sigmaw = 0.3; betayx = 0.03; betayz = 0.3; betayw = 0.67 s = c(3.2,0.8) em = function(W,s) { a= 1/2*(1/s[2]^2+betayx^2/sigmay^2); b= (y-muy+...

Dear all,   I have data from the following experimental design and trying to fit a mixed model with lme function according to following steps but struggling. Any help is deeply appreciated.   1) Experimental design: I have 40 plants each of which has 4 clones. Each clone planted to one of 4 blocks. Phenotypes were collected from each clone for 3 consecutive years. I have genotypes of plants. I need to relate phenotype to genotype.   2) I am reading data from a file with...

...ummary. My problem is that HTMLExport.list may itself call HTMLExport (and so HTMLExport.list) for components of the lists that are lists themselves (like "terms" component of an lm object). I get the following error message in this case : Error in as.vector(x) : evaluation is nested too deeply: infinite recursion? I believe this error is due to a too deep recursion but maybe there is a way to overcome this error (shouldn't it be a warning?). I would be very grateful if anybody could help me or give me a hint. thanks, Mathieu PS : code of these functions is in my last 2 mails. -...

...ion: 2.0 Vulnerable component: submission, lmtp, lda Fixed version: 2.3.11.3 Report confidence: Confirmed Solution status: Fix available Vendor notification: 2020-04-23 CVE reference: CVE-2020-12100 CVSS: 7.5 (CVSS:3.1/AV:N/AC:L/PR:N/UI:N/S:U/C:N/I:N/A:H) Vulnerability Details: Receiving mail with deeply nested MIME parts leads to resource exhaustion as Dovecot attempts to parse it. Risk: Malicious actor can cause denial of service to mail delivery by repeatedly sending mails with bad content. Workaround: Limit MIME structures in MTA. Solution: Upgrade to fixed version. Best regards, Aki Tuomi...

...ion: 2.0 Vulnerable component: submission, lmtp, lda Fixed version: 2.3.11.3 Report confidence: Confirmed Solution status: Fix available Vendor notification: 2020-04-23 CVE reference: CVE-2020-12100 CVSS: 7.5 (CVSS:3.1/AV:N/AC:L/PR:N/UI:N/S:U/C:N/I:N/A:H) Vulnerability Details: Receiving mail with deeply nested MIME parts leads to resource exhaustion as Dovecot attempts to parse it. Risk: Malicious actor can cause denial of service to mail delivery by repeatedly sending mails with bad content. Workaround: Limit MIME structures in MTA. Solution: Upgrade to fixed version. Best regards, Aki Tuomi...

Hi, Trying to plot a large dendrogram, I get the recursion limit error Error in match.fun(FUN) : evaluation nested too deeply: infinite recursion / options(expression=)? but setting options(expressions = 10000) or something large enough to solve the infinite recursion limit problem, I get Error: protect(): stack overflow Is there anything that can be done? Thanks Claudio Donati

Hi, I get following error when trying to plot a heatmap on a very large matrix (808 x5000). heatmap(ctab) Error: evaluation nested too deeply: infinite recursion / options(expressions=)? Call to heatmap function is not contained within any other function or so. Upon searching the R mailing list, I found that someone had the same problem and the suggested solution was to set an option using options(expressions = 500). I tried it but...

...=-.5) return(1) else return(2*v/z + 1/Recall(z,v-1)) } and while testing whether it works (ie F(z,v) is approx = besselK(z,1+v)/besselK(z,V). the recursion formula allows one to calculate besselK(z,1+v)/besselK(z,V) for large values of z ) i got the following error : "evaluation nested too deeply: infinite recursion / options(expressions=)?" i.e. zz=1 nn=1000 R=array(0,dim=nn) for (i in 1:nn) { print(i) R[i]=F(zz,-0.5+(i-1)) } the error occurs when i==713 but when one evaluates F(1,-.5+(713-1)) i get [1] 1423.001 note also that if v starts getting large, evaluation of F also gi...

...=-.5) return(1) else return(2*v/z + 1/Recall(z,v-1)) } and while testing whether it works (ie F(z,v) is approx = besselK(z,1+v)/besselK(z,V). the recursion formula allows one to calculate besselK(z,1+v)/besselK(z,V) for large values of z ) i got the following error : "evaluation nested too deeply: infinite recursion / options(expressions=)?" i.e. zz=1 nn=1000 R=array(0,dim=nn) for (i in 1:nn) { print(i) R[i]=F(zz,-0.5+(i-1)) } the error occurs when i==713 but when one evaluates F(1,-.5+(713-1)) i get [1] 1423.001 note also that if v starts getting large, evaluation of F also gi...

The issue: NFS fails to start in CentOS 7 if it cannot resolve any of a list of hosts. Well, my manager had to google to find the *truly* obscure solution that uses a deeply oddball syntax. In /usr/lib/systemd/system/nfs-server.service, you edit the following line so that it looks like this: ExecStartPre=-/usr/sbin/exportfs -r Notice the *deeply* weird syntax of "=-<cmd>". This apparently tells it that "a nonzero exit code" should be ignore...

Hi I want to create a new generic method, but I end up with an error (evaluation nested too deeply). see the transcript below. The function beginYear.Fun() works, but not beginYear. I have no idea why. Any ideas welcome, Rainer > setClass("fun", representation(x = "numeric")) [1] "fun" > new("fun") An object of class ?fun? Slot "x": nu...

Hi all! I¹m just implementing the Ullmann¹s algorithm for searching subgraph isomorphisms in graphNEL objects. The algorithm is running with smaller graphs, but when I¹m calling it i get an R error message saying that functions are nested too deeply in source code. I found out that the problem is in the so called refinement procedure of the algorithm which consists of 10 different functions, returning an adjacency matrix. I¹m calling the refinement procedure with M <- refine1(M, A, B, p_A, p_B, FAIL) (note that all parameters in call refin...

I am using CentOS 5.0 on my desktop workstation. Are there any deeply compelling reasons to upgrade to version 5.1? I read through the release notes but didn't see any whiz-bang new features. Perhaps some of you can share your personal experience letting us know if you have noticed any differences, etc.