search for: dbscan

Hello everyone, When looking for information about clustering of spatial data in R I was directed towards DBSCAN. I've read some docs about it and theb new questions have arisen. DBSCAN requires some parameters, one of them is "distance". As my data are three dimensional, longitude, latitude and temperature, which "distance" should I use? which dimension is related to that distance...

Hello list. My apologies if this topic has been discussed before on the list but I was unable to find it. I'm working on a way to cluster PCAP files according to the events recorded within them. I've decided to use Bro-IDS for feature extraction. I am looking at dbscan within the FPC library to accomplish my goal. Is it possible to feed a data frame to dbscan with more than two columns and have dbscan cluster on more than two features? -AK [[alternative HTML version deleted]]

I saw that R language has a cluster package which has in built PAM, CLARA and Kmeans (and many more) Clustering Algorithms. But, I couldnot find DBSCAN, ROCK, BIRCH algorithms (which I feel are standard ones). Aren't these implemented as well? Bhanu Kalyan K B.Tech Final Year, CSE Tel: +91-9885238228 Alternate E-Mail: reach4kalyan@gmail.com --------------------------------- We won't tell. Get more on shows you hate to love [[alt...

Hi people, Does anybody know some Density-Based Method for clustering implemented in R? Thanks, Fernando Prass _______________________________________________________

Hi, I'm trying to implement the DBSCAN algorithm to get O(N*LogN) complexity and I'd need a spatial tree of some sort (kd,r,bd..), or a function that computes radius-based search on spatial data, i.e. given a radius eps finds ALL the points which fall in the corresponding hypersphere centered on the current examined point. Is t...

Hi All , For an academic project I am trying to do the following Step 1 ) Draw and cluster a N ( lets say 3 ) column dataset by dbscan algorithm using R-project’s fpc package ( let say they are "training clusters" ) , Using dbscan as number of clusters are not know before hand Step 2 ) Once that is done i want to spread some new data points in the above plot space ( lets say these are &quot...

...umns. LargeVis is also insensitive to hyperparameter changes, which is important when running on large datasets that take time to compute. - Very fast approximate nearest neighbor search. I believe it to be the fastest nearest neighbor search available for R. - A fast implementation of the HDBSCAN clustering algorithm. HDBSCAN is a density-based clustering similar to DBSCAN and OPTICS (which are also implemented), but HDBSCAN allows the density threshold for clusters to vary. This makes it insensitive to hyperparameter changes and more flexible than either DBSCAN or OPTICS. There are other...

...umns. LargeVis is also insensitive to hyperparameter changes, which is important when running on large datasets that take time to compute. - Very fast approximate nearest neighbor search. I believe it to be the fastest nearest neighbor search available for R. - A fast implementation of the HDBSCAN clustering algorithm. HDBSCAN is a density-based clustering similar to DBSCAN and OPTICS (which are also implemented), but HDBSCAN allows the density threshold for clusters to vary. This makes it insensitive to hyperparameter changes and more flexible than either DBSCAN or OPTICS. There are other...

Is it possible to implement my own distance and mean for k-means clustering for any clustering package in R? Just looking for simple way, without creating a new package. karsar

All, How can we find a distance matrix for categorical data ie. given a csv below var1 var2 var3 var4 element1-1 yes x a k element1-2 no y b l element1-3 maybe y c m how can i compute the distance matrix between all the elements Actually i need it to create clusters on top

I use kmeans to classify spectral events in high and low 1/3 octave bands: #Do cluster analysis CyclA<-data.frame(LlowA,LhghA) CntrA<-matrix(c(0.9,0.8,0.8,0.75,0.65,0.65), nrow = 3, ncol=2, byrow=TRUE) ClstA<-kmeans(CyclA,centers=CntrA,nstart=50,algorithm="MacQueen") This works well when the actual data shows 1,2 or 3 groups that are not "too close" in a cross plot.

Hi, all. I'm trying to cluster 12,500 objects using hclust from package mva. The distance matrix takes up nearly 600 MB. The distance matrix also needs to be copied when being passed to the fortran routine that actually does the clustering (it's modified during the clustering), so that's 1200 MB. I'm actually on a machine with 2.5 GB of memory (and nothing else running), so I