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.... ......... ........ "chr17.chunk10.dose.fvd" "chr17.chunk10.dose.fvi" "chr17.chunk10.prob.fvd" "chr17.chunk10.prob.fvi" And I am using the *.dose files to convert the data into a text file. For a singlefile, the following works: chr17chunk1dose <- databel("chr17.chunk1.dose") databel2text(databel=chr17chunk1dose, file="chr1_chunk1.dose.txt", NAString="NA", row.names=TRUE, col.names=TRUE, transpose=FALSE) I am trying to do the conversion inside a loop for all the files at a time but can't figure out how to do it. A...

...g example as when I scale down the files I no longer get an error message. The error message that I get on the full file is: Error in checkSlotAssignment(object, name, value) : assignment of an object of class "NULL" is not valid for slot "data" in an object of class "databel"; is(value, "externalptr") is not TRUE The screen out put is: impute2mach(geno = "chr22_1000G.gen",info = "chr22_info", sample = "1000G.sample",machbase = "chr22_test", maketext = F, order_info = c(2:7), skip_info = 0) Options in effect:...

...allow the user to select several algorithms to use in the re-sampling scheme and with any of the parameters that the algorithm would normally take. * dagR (1.0.1) Lutz P Breitling http://crantastic.org/packages/dagR Functions to draw, manipulate and evaluate directed acyclic graphs. * DatABEL (0.0-6) Yurii Aulchenko http://crantastic.org/packages/DatABEL a package providing interface to C++ FILEVECTOR library facilitating analysis of large (giga- to tera-bytes) matrices; matrix storage is organized in a way that either columns or rows are quickly accessible; primarily aimed...

I'm in the process of converting some S3 methods to S4 methods. I have this function : setGeneric("enrichmentCalc", function(rs, organism, seqLen, ...){standardGeneric("enrichmentCalc")}) setMethod("enrichmentCalc", c("GenomeDataList", "BSgenome"), function(rs, organism, seqLen, ...) { ... ... ... })

CRAN (and crantastic) updates this week New packages ------------ * allan (1.0) Alan Lee http://crantastic.org/packages/allan Automates Large Linear Analysis Model Fitting * andrews (1.0) Jaroslav Myslivec http://crantastic.org/packages/andrews Andrews curves for visualization of multidimensional data * anesrake (0.3) Josh Pasek http://crantastic.org/packages/anesrake This