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2010 Nov 04
4
how to work with long vectors
...ty,
I have one data set like this, What I want to do is to calculate the
cumulative coverage. The following codes works for small data set (#rows =
100), but when feed the whole data set, it still running after 24 hours.
Can someone give some suggestions for long vector?
id reads
Contig79:1 4
Contig79:2 8
Contig79:3 13
Contig79:4 14
Contig79:5 17
Contig79:6 20
Contig79:7 25
Contig79:8 27
Contig79:9 32
Contig79:10 33
Contig79:11 34
matt<-read.table("/house/groupdirs/genetic_analysis/mjblow/ILLUMINA_ONLY_MICROBIAL_GENOME_ASSEMBLY/4083340/STAND...