search for: contig

Hello, We have a 3-node cluster setup with ocfs2. Since friday one of the nodes went down and would not become clustermember after a reboot because it was unable to write to the ocfs2 filesystem. Message: no space left on device. There is plenty of diskspace though. No problem whatsoever to create a file / directory on the filesystem using one of the other nodes. Today one of the remaining

This is related to the "No space on OCFS2 volume" error discussed here this past Sep/Oct. Our Oracle support rep pointed us to Metalink note #1232702.1 and suggested we should script something up to periodically check the free contiguous blocks in the group chains for the volume in question. Reading the note, I get how to get Clusters per Group X Bits per Cluster from the "stat //extent_alloc:NNNN". What I'm confused about is parsing the "stat //global_bitmap" section, and I thought I might have a bett...

Hello everybody, Can anyone tell me how I could analyze data that are at a contigency table form? I already found function cfa in the cfa package but I still don't understand how I could use this function in order to elaborate a contigency table. Every answer is welcome! --------------------------------- ÁðïêôÞóôå ôçí äùñåÜí óáò@yahoo.gr [[alternative HTML version dele...

Good Afternoon, My name is Gabriel, I'm doing an analysis if there is increase or decrease in dependence on the mutated genes, using 3 or more genes using the fisher exact test.I performed with success an analysis for two genes using fisher.test( ). example of the 2x2 contigency table: Gene A mutated | Gene A normalGene B mutated| 26 | 12--------------------------------------------------------------------------------------------Gene B normal | 10 | 50...

Hi all, I have 6 datasets(dataframes Assem_ContigsLen7 through all_ContigsLen12) containing 3 columns (contig_id, contig_length, read_count). Each dataset is composed of 3 types of contigs (assemblies of genomic fragments), 1- all Bacterial fragments, 2 - all Viral fragments, 3 - mixed fragments. I identified the type of contig through a merge w...

Hello Everybody, I'm making a contigency table with a dataset which looks like: Class Size Member1 Members2 Members3 etc. 1 2 A B 0 2 3 C D A 3 3 B A...

Split out subsystem specific changes for easier reviews. This will be squashed with main commit. Signed-off-by: Krzysztof Kozlowski <k.kozlowski at samsung.com> --- drivers/media/platform/sti/bdisp/bdisp-hw.c | 26 +++++++--------------- drivers/media/v4l2-core/videobuf2-dma-contig.c | 30 +++++++++++--------------- drivers/media/v4l2-core/videobuf2-dma-sg.c | 19 ++++------------ include/media/videobuf2-dma-contig.h | 7 ++---- 4 files changed, 26 insertions(+), 56 deletions(-) diff --git a/drivers/media/platform/sti/bdisp/bdisp-hw.c b/drivers/media/platform/...

Hi all, I need some help using read.ftable to read a contingency table. My columns are organized as follows: order--family--species--location--number of individuals I couldn't figure out how to change the data on my text file to be imported into R; and after you do that, is it possible to convert the table into a data frame? Any tips would be greatly appreciatted! Thanks a lot, Naiara.

Dear all, I am trying to construct 25x31 different matrices of 2x2 dimension. Here is the problem: we have the following matrix matrix(c(54+s0, 43+s1, 56-s0, 67-s1), nrow=2, ncol=2, byrow=T) the values for s0 and s1 are c(0:24) and c(0:31), respectively. I wrote the following code without the desired results

Hi, In Splus if I call the function crosstabs() the output is a contigency table; in each cell of the table is printed: N, N/RowTotal, N/ColTotal, N/Total. N is the number of observations in each cell. The same call to xtabs() in R will produce the contigency table but the only entry in each cell is N. How can I get the same relative frequencies that crosstabs() gi...

...It doesn't say anything about RHEL3. > We've been using async in our testing with no problems so far, and plan to > use it in production unless Oracle feels the combination is not yet > trustworthy. well - tough one, it works, but the big issue is that you rredologfile need to be contiguous on disk, otherwise you might have failures, exact same goes for rhel3 as rhas21. you can see that by running debugocfs eg : /ocfs/log/foo1.dbf -> debugocfs -f /log/foo1.dbf /dev/sdXXX that will show how many offsets (should only have one) in the extents if its more than 1, dd it over with...

Hi R-users, I am new to R environment.I want to carry out a correspondence analysis on a contigency table with 64 columns and 298 observation of Environmental data.In many cells of the contigency table the frequency is just the value '1'. I got the following error. > CAIV(Eplankton) Error in if (L[i, j] < 0) return("Table L must contain non-negative numbers") :...

...HEL3. > > We've been using async in our testing with no problems so > far, and plan to > > use it in production unless Oracle feels the combination is not yet > > trustworthy. > > well - tough one, it works, but the big issue is that you rredologfile > need to be contiguous on disk, otherwise you might have > failures, exact > same goes for rhel3 as rhas21. you can see that by running debugocfs > eg : > /ocfs/log/foo1.dbf -> debugocfs -f /log/foo1.dbf /dev/sdXXX > that will show how many offsets (should only have one) in the extents > if its...

...ff-by: Christoph Hellwig <hch at lst.de> > --- > .../userspace-api/media/v4l/buffer.rst | 17 --------- > .../media/v4l/vidioc-reqbufs.rst | 1 - > .../media/common/videobuf2/videobuf2-core.c | 36 +------------------ > .../common/videobuf2/videobuf2-dma-contig.c | 19 ---------- > .../media/common/videobuf2/videobuf2-dma-sg.c | 3 +- > .../media/common/videobuf2/videobuf2-v4l2.c | 12 ------- > include/media/videobuf2-core.h | 3 +- > include/uapi/linux/videodev2.h | 2 -- > 8 files changed, 3 insertion...

...in advance for any help! Cheers Roberto Patuelli Post-doc researcher Institute for Economic Research (IRE) University of Lugano Email: roberto.patuelli at lu.unisi.ch Homepage: http://www.people.lu.unisi.ch/patuellr ***************************** > dep.qglm <- glm(dep ~ lndist + com_lang + contig + history + fta + > lnarea_i + lngdppc_i + lngdp_i + island_i + landl_i + lnarea_e + lngdp_e + > lngdppc_e + island_e + landl_e + + e1_o + e3_o + e4_o + e5_o + e7_o + e8_o + e9_o + e10_o + e11_o + e12_o + e13_o + e14_o + e15_o + e17_o + e18_o + e19_o + e20_o + e21_o + e22_o + e23_o + e24_...

To whomever reads this, This post I accidentally sent to david himself, I am now sending it to the group. It will be out of order, and includes the strace. Regards Brian My apologies for any inconvenience. -------------- Hi David, Thanks for your response. The Error message is for e.g.: Cannot write file attributes of "\\MYHOST\backup\sparse\My Family Tree 6.0.zip.ffs_tmp".

....UR3ZbULpHJ/:[0]# setfattr -n user.stuff -v xattr-data file samba_server:/tmp/tmp.UR3ZbULpHJ/:[0]# getfattr -d file user.stuff="xattr-data" Furthermore, could you please check whether Samba is compiled with xattr support - i.e.: samba_server:# smbd -b | grep -i xattr > I then went to contig, `contig -n X:\share\sparesefile 0`, as well as a few other size. Maybe im using it wrong, but some testing on contig has only "Access is denied" when I try to write to anything. > > Oh one change, I put these settings only in Global (only, as opposed to also in the pool definiti...

Hi David, Configured as you mention, and prior with the other tweaks I had in the first place, Im getting the same results, which is "FSUTIL utility requires a Local NTFS Volume", and mapping it. I then went to contig, `contig -n X:\share\sparesefile 0`, as well as a few other size. Maybe im using it wrong, but some testing on contig has only "Access is denied" when I try to write to anything. Oh one change, I put these settings only in Global (only, as opposed to also in the pool definition), I jus...

...to be removed. Signed-off-by: Christoph Hellwig <hch at lst.de> --- .../userspace-api/media/v4l/buffer.rst | 17 --------- .../media/v4l/vidioc-reqbufs.rst | 1 - .../media/common/videobuf2/videobuf2-core.c | 36 +------------------ .../common/videobuf2/videobuf2-dma-contig.c | 19 ---------- .../media/common/videobuf2/videobuf2-dma-sg.c | 3 +- .../media/common/videobuf2/videobuf2-v4l2.c | 12 ------- include/media/videobuf2-core.h | 3 +- include/uapi/linux/videodev2.h | 2 -- 8 files changed, 3 insertions(+), 90 deletions(-) di...

...lyserve's cluster filesystem for its multipathing capability and potentially better performance, but at least we have a stable, functioning platform for the time being. My DBA still wants to try async mode with OCFS. We followed your recommendations for using dd to recreate the logfiles to be contiguous on disk (if we don't do that, they always seem to come up with two non-contiguous extents) and are doing some testing. We were, however, wondering what kind of symptoms would appear if we were to trigger the non-contiguous aio problem that you have described. We weren't sure if it wou...