search for: conda

...nkly, I have had a lot of problems, but I think the stuff below points to a possible bug in R's (custom) configure checks for C++11/14/17, but not for C++98. This is a report about R from the R-3-6 branch, with a svn checkout from today, revision r77135. In my case the compiler name is x86_64-conda_cos6-linux-gnu-g++, not g++. I denote this in my configure call, using the CC variable. A snippet of the full configure is ../${SRCDIR}/configure SHELL='/bin/bash' \ --prefix="${CONDA_PREFIX}/R/${R_VERSION}" \ CC="x86_64-conda_cos6-linux-gnu-gcc" \ CXX="x8...

Hello, I found out an unexpected behaviour of search queries with mixed "AND" and "OR". With search query "\( condA OR condB condC \)" I get an error: Fatal: Use parenthesis when mixing ANDs and ORs if I switch left and right OR-part and use the query "\( condB condC OR condA \)" I get a result, but it is not the expected result of the query "\( \( condB condC \) OR condA \)" I get th...

...lems, but I think the stuff below points to a possible bug in R's > (custom) configure checks for C++11/14/17, but not for C++98. > > This is a report about R from the R-3-6 branch, with a svn checkout from > today, revision r77135. > > In my case the compiler name is x86_64-conda_cos6-linux-gnu-g++, not g++. I > denote this in my configure call, using the CC variable. A snippet of the > full configure is > > ../${SRCDIR}/configure SHELL='/bin/bash' \ > --prefix="${CONDA_PREFIX}/R/${R_VERSION}" \ > CC="x86_64-conda_cos6-linux-gnu...

...t(D~Cond+Q1,conf.level=0.95,data=x,type="Tukey")) > o5 Simultaneous tests: Tukey contrasts Call: simtest.formula(formula = D ~ Cond + Q1, data = x, conf.level = 0.95, type = "Tukey") Tukey contrasts for factor Cond, covariable: Q1 Contrast matrix: CondA CondB CondC CondB-CondA 0 -1 1 0 0 CondC-CondA 0 -1 0 1 0 CondC-CondB 0 0 -1 1 0 Absolute Error Tolerance: 0.001 Coefficients: Estimate t value Std.Err. p raw p Bonf p adj CondB-CondA 5.555 -1.461 3.802 0.151 0.453 0.319 CondC-C...

For a while I have been getting that the complex tests fails on RHEL 6. The specific issue has to do with tanh (see below for full output from complex.Rout.fail). This is both with the stock compiler (GCC 4.4.7) and a compiler supplied through the conda project (GCC 4.8.5). The compiler supplied through conda ends up linking R to certain system files, so the binary is not completely independent (although most dynamically linked libraries are coming from the conda installation). A search on R-devel reveals a discussion in April on an issue report...

On 14.12.2016 12:18, Juergen Raschke wrote: > Hello, > > > I found out an unexpected behaviour of search queries with mixed > "AND" and "OR". > > > With search query "\( condA OR condB condC \)" I get an error: > Fatal: Use parenthesis when mixing ANDs and ORs > > if I switch left and right OR-part and use the query > "\( condB condC OR condA \)" > > I get a result, but it is not the expected result of the query > "\( \( condB con...

...t;> For a while I have been getting that the complex tests fails on RHEL 6. >> The specific issue has to do with tanh (see below for full output from >> complex.Rout.fail). >> >> This is both with the stock compiler (GCC 4.4.7) and a compiler supplied >> through the conda project (GCC 4.8.5). The compiler supplied through >> conda >> ends up linking R to certain system files, so the binary is not completely >> independent (although most dynamically linked libraries are coming from >> the >> conda installation). >> >> A sear...

...s. Firstly, each participant filled in a questionnaire, the result of which is a score. > questionnaire ID Score 1 1 6 2 2 5 3 3 6 4 4 2 ... Secondly, each participant did a task which required a series of button-pushes. The response is binary. The factors CondA and CondB describe the structure of the stimulus: > experiment ID CondA CondB Response 1 1 a1 b1 1 2 1 a2 b2 0 3 1 a3 b1 0 4 1 a4 b2 0 5 1 a1 b1 1 6 1 a2 b2 0 7 1 a3 b1 0 8...

...on RHEL 6. >> The specific issue has to do with tanh (see below for full >> output from >> complex.Rout.fail). >> >> This is both with the stock compiler (GCC 4.4.7) and a >> compiler supplied >> through the conda project (GCC 4.8.5). The compiler supplied >> through conda >> ends up linking R to certain system files, so the binary is >> not completely >> independent (although most dynamically linked libraries are >> coming from the >&...

...o es de usar una versión específica de Python, si no > de encontrar un "environment" específico donde hacer la instalación con > "pip". > Mira aquí en la ayuda: > > https://rstudio.github.io/reticulate/articles/python_packages.html > > En la sección de "Conda" donde aparece cómo crear un entorno e indicárselo > a R para que instale ahí tus nuevas librerías. > > Gracias, > Carlos Ortega > www.qualityexcellence.es > > El dom., 2 ago. 2020 a las 19:27, Diego Martín (<ako.sistemas en gmail.com>) > escribió: > > >...

...rds creating JIT compilers. llvmlite is available both as source code and as binaries for a number of platforms. Source code is available on PyPI and Github: https://pypi.python.org/pypi/llvmlite/ https://github.com/numba/llvmlite/ Binaries for Linux, Windows and OS X are available through the anaconda.org service and can be downloaded using Continuum's open source package manager "Conda" ("conda update -c numba llvmlite" or "conda install -c numba llvmlite"). Documentation is at http://llvmlite.pydata.org/en/latest/ There is an adaptation of the Kaleidoscope t...

...Daniel Hansen wrote: > For a while I have been getting that the complex tests fails on RHEL 6. > The specific issue has to do with tanh (see below for full output from > complex.Rout.fail). > > This is both with the stock compiler (GCC 4.4.7) and a compiler supplied > through the conda project (GCC 4.8.5). The compiler supplied through conda > ends up linking R to certain system files, so the binary is not completely > independent (although most dynamically linked libraries are coming from the > conda installation). > > A search on R-devel reveals a discussion in...

...plex tests fails > on RHEL 6. > The specific issue has to do with tanh (see below for full > output from > complex.Rout.fail). > > This is both with the stock compiler (GCC 4.4.7) and a > compiler supplied > through the conda project (GCC 4.8.5). The compiler supplied > through conda > ends up linking R to certain system files, so the binary is > not completely > independent (although most dynamically linked libraries are > coming from the > conda instal...

...a todos por > responderme. Especialmente a Carlos Ortega que, como siempre, me ha vuelto > a enseñar el camino. > > El asunto era exactamente como decía > Carlos; habiendo yo aplicado la siguiente solución: > > library(reticulate) > > conda_create(envname = "r-reticulate", > packages = "python", > forge = TRUE, > channel = character(), > conda = "auto") # Create a new environment. No > muestro el resultado porque ha sido muy larg...

...last time). Would it be possible to review and merge them if they are OK? The first one uses AC_SEARCH_LIBS instead of AC_CHECK_LIB, looking for ncursesw before ncurses since ncurses is usually build with wide character support in which case non-w prefixed libraries are not created. ArchLinux (and Conda) then make fake ld linker libraries for the non-w prefixed ones. The second patch fixes a typo where CPPFLAGS is misspelt as CPPLAGS which causes them to be forgotten about in the middle of configure. Best regards, Ray. -------------- next part -------------- A non-text attachment was scrubbed...

...ways of installing software (You want R and Python? No problem!) which gets lost if we start using different base images. Or at least we have to be careful about what base images we use so that they all share Ubuntu bionic as the base. As we are only after the R executables themselves maybe using conda to install them or compiling from source is a way to explore. Thanks! T [[alternative HTML version deleted]]

Thanks Keith. We checked, and indeed libopenblas is not linked against libomp nor libgomp. We suspect this is because we used conda to install R and OpenBLAS. So I guess we should be barking up the conda tree instead? By the way, I also noticed on my home machine (Ubuntu), /usr/lib/libopenblas.so.0 is also not linked against those, for what that's worth. Regards, Ben On 01/10/2018 12:04 AM, Keith O'Hara wrote: &gt...

I?m not really familiar with conda, but if they?re being packaged together then an omp build might be more appropriate. Perhaps another point for Juan?s list: whether OpenBLAS is the right choice to pair with. The library itself hasn?t produced optimized kernels for any of the Intel *Lake chips yet; might be worth considering its...

True or False: when USE_OPENMP=1 is not used, then race conditions are not unexpected. If True, and we wish to avoid race conditions, then sources such as the conda channel and ubuntu would need to add this enhancement. If False, then what is the next step (i.e. forum) for debugging the race condition? On 01/11/2018 07:56 AM, Ista Zahn wrote: > > > On Jan 10, 2018 8:24 PM, "Benjamin Tyner" <btyner at gmail.com > <mailto:btyner...

...e on tests/reg-tests-2.R) It is entirely possible that it is an error on my end, I use export TZ="US/Eastern" but I have been using this for a while, and R-4.0.3-patched built today passes make tests. Details below, and I am happy to provide more information. Build platform: inside a conda environment on linux. I have been doing this for a while, but it is certainly a non-standard setup. GCC 7.3 Best, Kasper On R version 4.0.3 beta (2020-10-01 r79286) I get > x = Sys.time() > attributes(x) $class [1] "POSIXct" "POSIXt" > attributes(as.POSIXlt(x)) $nam...