Displaying 8 results from an estimated 8 matches for "caper".
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2013 May 07
2
Kernel BUG: __tree_mod_log_rewind
I can get btrfs to throw a kernel bug easily by running btrfs fi
defrag on some files in 3.9.0:
May 7 01:57:33 caper kernel: [ 0.000000] Linux version
3.9.0-030900-generic (apw@gomeisa) (gcc version 4.6.3 (Ubuntu/Linaro
4.6.3-1ubuntu5) ) #201304291257 SMP Mon Apr 29 16:58:15 UTC 2013
...
May 7 02:09:21 caper kernel: [ 726.745485] ------------[ cut here
]------------
May 7 02:09:21 caper kernel: [ 726.74556...
2013 Mar 06
1
Difficulty in caper: Error in phy$node.label[which(newNb > 0) - Ntip]
Hello,
I'm doing a comparative analysis of mammal brain and body size data.
I'm following Charlie Nunn and Natalie Cooper's instructions for
"Running PGLS in R using caper".
I run into the following error when I create my comparative dataset,
combining my phylogenetic tree (mammaltree) and taxon measures
(mammaldata):
"Error in phy$node.label[which(newNb > 0) - Ntip] : only 0's may be
mixed with negative subscripts"
My full script is provided...
2013 Feb 06
1
CAPER pgls() anova not working with variable as factor
Hi there,
>
> I am using the function pgls in the CAPER package, everything seems to run
> fine except for one of my variables.
> When using this variable as continuous the anova works without problem,
> but if using the same variable as factor (in fact, this is what it is), the
> program returns this answer:
>
> Error in terms.formula...
2013 Apr 09
0
Simple GLS regression with CAPER
Dear R experts,
I hope this is the right list for my question.
As a newcomer in R, I am testing the R CAPER package, applying a simple
regression on a phylogeny tree with three binary traits: (t1, t2, t3).
My goal is to test the sensitivity to a correlation between t1 and t3. But
if a correlation of 100% is considered (i.e. t3 = t1). The pgls method of
CAPER seems to crash:
You can find there the code...
2011 Aug 04
0
phyres function in caper package
## I clicked the send-button too quickly, before changing the title of the message etc... Sorry.##
I am running following phylogenetic analyses with the caper package:
data=read.table(file="data.txt",header=T,sep="\t")
tree = read.nexus("Tree.nex")
primate = comparative.data(phy=tree, data=data,
names.col=Species, vcv=TRUE, na.omit=FALSE, warn.dropped=TRUE)
PGLM_brain=pgls(ln_brain~ln_body,data=primate, lambda...
2003 Jan 20
1
LDAP PDC, net rpc vampire
still digging at this:
[2003/01/20 14:26:38, 2] passdb/pdb_ldap.c:ldapsam_connect_system(421)
ldap_connect_system: succesful connection to the LDAP server
[2003/01/20 14:26:38, 4] passdb/pdb_ldap.c:ldapsam_open(472)
The LDAP server is succesful connected
[2003/01/20 14:26:38, 4] passdb/pdb_ldap.c:ldapsam_getsampwnam(1573)
We don't find this user [Administrator] count=0
[2003/01/20
2024 May 22
1
confint Attempts to Use All Server CPUs by Default
...g like a confint() method:
h <- help.search("confint", agrep = FALSE)
p <- sort(unique(h$matches$Package))
length(p)
## [1] 69
p
[1] "bamlss" "bbmle" "binom" "brglm2"
[5] "broom" "caper" "car" "CDM"
[9] "CLME" "coin" "crosstable" "dclone"
[13] "doBy" "drc" "Ecfun" "emmeans"
[17] "epigro...
2024 May 21
1
confint Attempts to Use All Server CPUs by Default
? Tue, 21 May 2024 08:00:11 +0000
Dario Strbenac via R-devel <r-devel at r-project.org> ?????:
> Would a less resource-intensive value, such as 1, be a safer default
> CPU value for confint?
Which confint() method do you have in mind? There is at least four of
them by default in R, and many additional classes could make use of
stats:::confint.default by implementing vcov().
>