search for: buhl

I am trying to use the value of an ID variable in an if statement and not getting the results I expected. # ID values for two school districts > with(rf, tapply(DistrictID, DistrictName, min) ) Aberdeen School Dist. # 58 Buhl Joint School District 59340 53409 This creates DNAME as I expected ... rf$DNAME[rf$DistrictID==59340] <- 'Aberdeen' rf$DNAME[rf$DistrictID==53409] <- 'Buhl' > with(rf, table(DistrictName, DNAME) )...

Hi,   I need to generate a heatmap on a square matrix and wouldn't want to reorder the columns and the rows on the heatmap display.    I have used the options Rowv=NULL and Colv=NULL but doesn't seem to work. Following is a snippet of the heatmap function i am using. args <- commandArgs(); inputfile <- args[2] imgfile   <- args[3] bitmap(imgfile, height=15, width=15, res=100,

Hi ! If i start t@x 2005 (from Buhl Data) i get the following messages in stman2005.log: err:font:OpenFontFile FT_New_Face rets 81 err:font:OpenFontFile FT_New_Face rets 81 err:font:OpenFontFile FT_New_Face rets 81 Building font metrics. This may take some time... err:syslevel:_CheckNotSysLevel Holding lock 0x7b8485a0 level 3 err:...

Can biomaRt connect to data base "http://mirecords.umn.edu" or a branch of it ... for instance the validated miRNAs list ..? Thank you very much. Maura tutti i telefonini TIM! [[alternative HTML version deleted]]

#======== This mail is forwarded from Mark Leeds (markleeds at verizon.net) who is experiencing troubles sending to the list himself. #======== Hi: ?I went through Soren Buhl's documentation for installing and running R2WinBUGS in linux. Thank you Soren for the nice documentation. I installed wine and I think it worked because I was able to get a winbugs pop up screen to open. I also created an alias in my .bashrc file?and set it to winbugs = 'wine Z:/opt/Open...

...by \221thetext\222, which is obviously difficult to read. Is there another setting that I am missing that affects the usage of directional quotes for the help pages? Thanks, Jim -- James W. MacDonald, M.S. Biostatistician Douglas Lab University of Michigan Department of Human Genetics 5912 Buhl 1241 E. Catherine St. Ann Arbor MI 48109-5618 734-615-7826

Hi, I am using R 2.8.1 version on Windows with RGui. I have loaded pls package lattest version (2.1-0). When I try to load this package in R using library(pls) command, the following error message appear: Erreur dans library(pls) : 'pls' n'est pas un package valide -- a-t-il ?t? install? < 2.0.0 ? Could you please help me to solve this problem? Regards Damien -- View this

I can't seem to find info on how to unload packages that have been loaded. My goal in doing so is to gain access to functions that have been masked out by those packages. Or is there another way to do so? Thanks in advance. Jim Bouldin, PhD Research Ecologist Department of Plant Sciences, UC Davis Davis CA, 95616 530-554-1740

hello if there is a package can do blast in R? [[alternative HTML version deleted]]

Hello, I have a sample data frame which looks like this day od month 1 1 0.1 2 2 3 #VALUE! 1 3 5 0.4 12 4 7 0.8 10 5 11 - 3 6 14 s 7 7 18 -- 12 8 27 19 7 Now i wish to filter all the non numeric values and replace it with "NA". The data frame

Hi, I am analysing gene expression data using the heatmap.2 function in R and I was wondering what is the formula of the "raw z-score" bar which shows the colors for each pixel. According to that post: https://mailman.stat.ethz.ch/pipermail/r-help/2006-September/113598.html, it is the (actual value - mean of the group) / standard deviation. But, mean of which group? Mean of the gene

...ates.1252;LC_MONETARY=English_United States.1252;LC_NUMERIC=C;LC_TIME=English_United States.1252 attached base packages: [1] stats graphics grDevices datasets utils methods base other attached packages: [1] XML_1.99-0 -- James W. MacDonald, M.S. Biostatistician Douglas Lab 5912 Buhl 1241 E. Catherine St. Ann Arbor MI 48109-5618 734-615-7826 ********************************************************** Electronic Mail is not secure, may not be read every day, and should not be used for urgent or sensitive issues

Hi all, I'm just tried to start analysing some micro-array chips. And R was asking for this package. When I tried to install it it says that: Using R version 2.10.1, biocinstall version 2.5.10. Installing Bioconductor version 2.5 packages: [1] "hugene10stv1cdf" Please wait... Warning message: In getDependencies(pkgs, dependencies, available, lib) : package ?hugene10stv1cdf? is

I am running a simple SQL SELECT statement that involvs 50k + data points using R and the RJDBC interface. I am facing very slow response times in both the RGUI and the R console. When running this SQL statement directly in a SQL client I have processing times that are a lot lot faster (which means that the SQL statement itself is not the problem). Did any of you compare RJDBC vs RMySQL or is

Hi, I'm using Sweave to prepare a descriptive report. Are at least 20 tables built with xtable command of kind: <<echo=F, results=hide>>= q5 = factor(Q5, label=c("N?o", "Sim")) (q5.tab = cbind(table(q5))) @ <<echo=F, results=tex>>= xtable(q5.tab, align="l|c", caption.placement = "top", table.placement='H') @ I'm

Hello to all, i'm trying to install the german tax software "Tax@2006". using: wine 0.9.5 on ubuntu 5.10 I type "wine z:/setup.exe" (z = wine's dos-device cdrom). the follonwing steps follows: - Splash Screen "Buhl Data" - Installshield preparing installation... - Installshield starts, but brings a Popup: - Message: "Failed to extract "Dll_.ini" from the binary table." - Installation Assistent finished "Assistent interrupted..." end... this is the ouput on the console: ####...

I would like to build a package for the HT HG-U133+ PM arrays from affy, but I can't find any good documentation on how to go about it. Naively using makecdfenv's make.cdf.package() causes R to seg-fault. I'm unfamiliar with the CDF format as such, but I'm guessing that it's changed somewhat because the PM arrays no longer have P/A and mismatches. I'm looking to build

Hi, I am trying to run affylmGUI on my mac computer. I have already installed the Tlc package as well as Bwidgets through ActiveTcl conversion installing files. However, when running affylmGUI() on R, I keep getting the message in the attached file. I have copied the tcl folders from the root library to the user library, and have obtained the same issue. I would really appreciate if

Hello dear R help group, I would like to download the tRNA data on: http://gtrnadb.ucsc.edu/download.html And then import it into R. Can anyone direct me as to how to do so? Thanks, Tal ---------------------------------------------- My contact information: Tal Galili E-mail: Tal.Galili@gmail.com Phone number: 972-52-7275845 FaceBook: Tal Galili My Blogs: http://www.talgalili.com (Web and

Hello, I am trying to calculate the median of numbers across each row for the data shown below , with the condition that if the number is negative, that it should be ignored and the median should be taken of only the positive numbers. For eg: data is in Column A,B,C. Column D and E demonstrates what I want to get as answer A B C Median median value -13.6688115 -32.50914055