search for: brostrom

> On 10 Feb 2017, at 14:53, G?ran Brostr?m <goran.brostrom at umu.se> wrote: > > Thanks to all who answered my third question. I learned something, but: > > On 2017-02-09 17:44, Martin Maechler wrote: >> >>>> On 9 Feb 2017, at 16:00, G?ran Brostr?m <goran.brostrom at umu.se> wrote: >>>> >>>&gt...

Hmm... I have the same problem on hpux10.20. I put the additional libs into a subdir called contrib, and R INSTALL from there. I have R-0.61.1 Alpha Dec21 1997. Without restored data they work OK. Osman > ---------- > From: Goran Brostrom[SMTP:gb at stat.umu.se] > Sent: Tuesday, January 27, 1998 3:07 AM > To: r-help at stat.math.ethz.ch > Subject: R-beta: survival4 > > > I have installed R (latest) on two machines running RedHat Linux, > Versions 4.2 and 5.0, respectively. In both cases I get the > foll...

Background: We have a computer lab with two ubuntu 18.04 machines (and lots of windows computers) and I am searching for a convenient way to keep the machines up-to-date regarding R in the first place, but also ubuntu itself. The problem is that the lab is isolated from the internet. Some versions of ubuntu ago I had success with apt-mirror and apt-get for the OS, but now I cannot get it to

> > On 9 Feb 2017, at 16:00, G?ran Brostr?m <goran.brostrom at umu.se> wrote: > > > > In my package 'glmmML' I'm using old C code and linpack in the optimizing procedure. Specifically, one part of the code looks like this: > > > > F77_CALL(dpoco)(*hessian, &bdim, &bdim, &rcond, work, info); > >...

On 2018-07-07 06:27, Dirk Eddelbuettel wrote: > > On 7 July 2018 at 00:51, G?ran Brostr?m wrote: > | My repo is > | > | deb https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/ > | > | Is that wrong? > > That repo will give you R and key R packages like Matrix lme4. (And you > chose to ignore this repo by compiling R yourself ...). Not really: I installed

On Fri, Jul 6, 2018 at 8:18 AM G?ran Brostr?m <goran.brostrom at umu.se> wrote: > > > > Den 2018-07-06 kl. 16:28, skrev Dirk Eddelbuettel: > > > > On 6 July 2018 at 12:31, Enrico Schumann wrote: | Just as one more > > datapoint: I cannot reproduce the segfault, with | R 3.5.1 on > > (L)Ubuntu 18.04. (I use the Ubuntu pac...

...ror in .C("coxfit2", iter = as.integer(iter.max), as.integer(n), as.integer(nvar), : C/Fortran function not in load table Why is "coxfit2" not in the load table? How do I fix it? System is Linux. Goran -------------------------------------------------------------------- Goran Brostrom phone : +46 90 7865223 Department of Statistics 7865213 (secr) Umea University fax : 7866614 S-90187 Umea, Sweden e-mail: gb at stat.umu.se -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-....

Trying https://cran.r-project.org got me "The owner of cran.r-project.org has configured their website improperly" If I try http (instead of https) I'm redirected to www.project.org ("Project America") Any ideas? G?ran Brostr?m

...o CRAN with no problems. Cheers, Bert Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it." -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) On Fri, Apr 29, 2016 at 2:26 PM, G?ran Brostr?m <goran.brostrom at umu.se> wrote: > Trying https://cran.r-project.org got me > > "The owner of cran.r-project.org has configured their website improperly" > > If I try http (instead of https) I'm redirected to > > www.project.org ("Project America") > > Any ide...

On 2018-07-07 13:08, Jeroen Ooms wrote: > On Fri, Jul 6, 2018 at 11:57 PM, G?ran Brostr?m > <goran.brostrom at umu.se> wrote: >> I am installing R_3.5.1 from source on ubuntu 18.04, and 'config' + >> 'make' gives me (at the end) > > Probably something went wrong earlier in the build when compiling > the Matrix package. However it's much easier to install R for...

...irect Maximum Likelihood Approach. The "glmm" in the "repeated" package (Lindsey), the "glmmPQL" in the "MASS" package (Ripley) and "glmmGIBBS" (Myle and Calyton) are not using the full maximum likelihood as I understand. The "glmmML" of Brostrom uses the "full maximum likelihood" by approximating the integral via Gauss- Hermite quadrature. However, glmmML is only valid for the random intercept model and the binomial family must be represented only as binary data. Does the lmer do the work? The reason for asking that is: McCu...

I am installing R_3.5.1 from source on ubuntu 18.04, and 'config' + 'make' gives me (at the end) Loading required package: Matrix Error: package or namespace load failed for ?Matrix? in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object '/home/goran/src/R-3.5.1/library/Matrix/libs/Matrix.so': /home/goran/src/R-3.5.1/library/Matrix/libs/Matrix.so:

...CK authors in my DESCRIPTION file. My guess is that the root cause is that BLAS/LAPACK is written in FORTRAN 77, which is said to be a subset of the current Fortran version but obviously isn't. Thanks, G?ran > > Avi > > On Wed, Sep 11, 2019 at 4:08 PM G?ran Brostr?m <goran.brostrom at umu.se > <mailto:goran.brostrom at umu.se>> wrote: > > Berend, > > I do not think this works with gfortran 7+. I am calling the BLAS > subroutine dgemv from Fortran code in my package eha, and the check > (with R-devel) gives: > > gmlfu...

...ch. :) > > Isn't possible for me to obtain the network from the correlation matrix? I know nothing about correlation networks, but by googling I found two R packages, ggraph and corrr, that may be of interest to you. G?ran > On Thu, Jul 6, 2017 at 1:38 AM, G?ran Brostr?m <goran.brostrom at umu.se > <mailto:goran.brostrom at umu.se>> wrote: > > On 2017-07-05 11:56, Jim Lemon wrote: > > Hi Chin Yi, > If you are trying to correlate "Health" with "Disease", i.e. > > cydf<-read.table(text="OTU...

In my package 'glmmML' I'm using old C code and linpack in the optimizing procedure. Specifically, one part of the code looks like this: F77_CALL(dpoco)(*hessian, &bdim, &bdim, &rcond, work, info); if (*info == 0){ F77_CALL(dpodi)(*hessian, &bdim, &bdim, det, &job); ........ This usually works OK, but with an ill-conditioned data

...N2, n-x) / Choose(N1+N2, n) for x = 0,...,n" R> choose(3,0) * choose(3,0) / choose(6,0) [1] 1 This result is correct, and obviously dhyper is implemented in some way not consistent with the documentation. Also note the spelling error of 'choose' in the documentation. --- Goran Brostrom phone : +46 90 7865223 Department of Statistics 7865213 (secr) Umea University fax : 7866614 S-90187 Umea, Sweden e-mail: gb@stat.umu.se -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-....

...sion, the "ld" command to create the ".so" file fails miserably. The Windows R documentation talks about "DLL"s, of which I know very little. Can anyone tell me how to create R-loadable C-code with Cygnus gcc under Windows (NT, 95)? Maybe it isn't possible? Goran Brostrom Dept. of Statistics Umea University Umea, Sweden =-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or "[un]subscribe" (in the "body",...

...sion, the "ld" command to create the ".so" file fails miserably. The Windows R documentation talks about "DLL"s, of which I know very little. Can anyone tell me how to create R-loadable C-code with Cygnus gcc under Windows (NT, 95)? Maybe it isn't possible? Goran Brostrom Dept. of Statistics Umea University Umea, Sweden =-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or "[un]subscribe" (in the "body",...

> x <- factor(1:3, labels = c("b" , "f", "minus")) > x [1] b f minus Levels: b f minus I want to change all "minus" to "b". I know that the simplest way to do this is > levels(x) <- c("b", "f", "b") and also that > x[x == "minus"] <- "b" > x <- factor(x)

> x <- factor(1:3, labels = c("b" , "f", "minus")) > x [1] b f minus Levels: b f minus I want to change all "minus" to "b". I know that the simplest way to do this is > levels(x) <- c("b", "f", "b") and also that > x[x == "minus"] <- "b" > x <- factor(x)