search for: brood

...terpretable way to collapse a data set. Suppose I have a data set that looks like this: h <- structure(list(INDEX = structure(1:6, .Label = c("1", "2", "3", "4", "5", "6"), class = "factor"), TICKS = c(0, 0, 0, 0, 0, 3 ), BROOD = structure(c(1L, 1L, 2L, 3L, 3L, 3L), .Label = c("501", "502", "503"), class = "factor"), HEIGHT = c(465, 465, 472, 475, 475, 475), YEAR = structure(c(1L, 1L, 1L, 1L, 1L, 1L), .Label = c("95", "96", "97"), class = "facto...

...e measured repeatedly over time I presume that this should be a random factor? Growth is not linear exactly (more quadratic), so I thought rather than put time in the fixed model I want to control for the effects of time as a random factor.... The resulting model is this where id=chick identity and brood=nest box model1<-lmer(weight~treatment1*treatment2*brood size*sex+(id|brood)+(1|brood)+(1|age), data=H) Is this the "right" approach or am I barking up the wrong tree? Any suggestions much appreciated, Simon Simon Pickett PhD student Centre For Ecology and Conservation Tremough Camp...

Hi I'm encountering an error/warning when doing multiple comparisons with the package multcomp on a coxme model. My data: I'm looking at the removal of brood from the nest according to three treatments I applied on the brood. The brood and the workers caring about the brood in the nest, belonged to different colonies. Factor: treatment (3 levels: tx,uv,meta) Random effect 1: origin of brood Random effect 2: origin of workers modelling this with pp.c...

...ave a dataframe of bird nest check observations, in which I know the date of the first check, the date of the second check (both currently in Julian date format), the status of the nest at the second check (alive or failed), and the date that the nest hatched (i.e. changed from Incubation stages to Brood-rearing stage). Many nests have more than one record, as there were several nest checks throughout the duration of the nesting attempt. What I want to do is assign a nest Stage variable, either Incubation or Brood-rearing. It's very easy to do so when the second nest check was before the hatch...

...ng a number of papers and other resources including R help, but I am still a little confused on how to write my model (I thought I had it). I have asked a number of questions on different forums; most of which have been resolved. My main concern right now is whether my model is correct. I studied broods of precocial chicks and watched each chick every other day for five minutes if possible. As chicks on the same day are completely non-independent the mean was found for each brood for each day. Variables that were recorded were the behaviours during that time and the habitats used. There were sev...

Hello, I have problems running Star Craft - Brood War System: arch linux 64 bit ati radeon x1300 pro open source driver (xf86-video-ati) KDE 4.8.2 wine-1.5.1 Problem: The game starts but it's extremely slow. It's unplayable. It is slow even in the menus (on the animated menus it is slower). I've tried the changing the registry keys...

Hello all, If someone could take a little time to help me then I would be very grateful. I studied piping plovers last summer. I watched each chick within a brood for 5 minutes and recorded behaviour, habitat use and foraging rate. There were two Sites, the first with 4 broods and the second with 3 broods. http://r.789695.n4.nabble.com/file/n4511178/Table_PP_Maslo_et_al.png As the data within a brood is non-independent and the fact that there were so few,...

I'm having a little trouble with trying to install newer versions of Starcraft (updates or Brood War) on a win-free Wine installation. I can run the installer off the original Starcraft CD, and it puts all of the files in the right place, adds a couple registry entries, and then chokes on creating the entries in the Start Menu. Still, I can kill the process at that point, and I have a usable...

Dear R users, I am trying to fit a GLMM using lmer to a dataset where the brood identity (LNRREIR) is nested within mothers identity. The reason for this is that each mother can have several nests within each year and also between years. I am running the following script (actually I have tried all different combinations with LNRREIR and mother): mod <- lmer(sr~z.hat...

...;, "3/5/2010", "3/6/2010", "3/7/2010", "3/8/2010", "3/9/2010", "3/10/2010", "3/11/2010", "Biweekly Lower 90% Confidence Interval", "Biweekly Total", "Biweekly Upper 90% Confidence Interval", "Brood-year? Lower 90% Confidence Interval", "Brood Year Total", "Brood-year Upper 90% Confidence Interval"), First = c("0 ( ? )", "n (0 ? 0)", "357 (123 ? 123)", "144 (95 ? 152)", "73 (126 ? 152)", "43 (108 ? 108)", &...

...2010 102 (111 ? 140) 0 ( ? ) 3,265 (27 ? 48) 3/10/2010 0 ( ? ) 35 (66 ? 66) 1,993 (30 ? 55) 3/11/2010 35 (125 ? 125) 35 (70 ? 70) 1,445 (33 ? 62) Biweekly Lower 90% Confidence Interval -537 -549 35,097 Biweekly Total 1,425 402 296,085 Biweekly Upper 90% Confidence Interval 3,388 1,353 557,074 Brood-year? Lower 90% Confidence Interval 2,578,499 74,306 2,249,920 Brood Year Total 4,455,877 314,206 7,347,719 Brood-year Upper 90% Confidence Interval 6,333,255 541,552 12,058,021 ? Felipe D. Carrillo Supervisory Fishery Biologist Department of the Interior US Fish & Wildlife Service Californi...

I've got a problem to make run Starcraft in local area network . I can see in the ipx screen the name of the network game (sometimes) and when i click it returns me an error I try to play with another computer which runs on win98 Please asnwer me . I read about ipx_route but i don't know how ti use it

...listed the ones that I wanted to test. I had also coded the ones that are labels and not continuous data using the as.factor command and I ran the most complex model and ran summary() and it seemed to have worked fine. My model was: fm2test<-lmer(Feeding~MF.vs.OF+Age.class+tide.h.l+Site+HDp+(1|Brood), data=ABMtest.df) and then I wanted to use the dredge command as so: dd<-dredge(fm2test, trace=TRUE, rank="AICc", REML=FALSE) I got an error: Error in UseMethod("fixef") : no applicable method for 'fixef' applied to an object of class "mer" I have no...

Dear all, This question is basic but I am stumped. After running the below, I receive the message: "non-integer #successes in a binomial glm!" model1 <- glmmML(y~Brood.Size*Density+Date.Placed+Species+Placed.Emerging+Year+rate.of.parperplot, data = data, cluster= data$Patch, family=binomial(link="logit")) My response variable is sex ratio, and I have learned quickly not to use proportion values as data. Instead, my response variable y is a 2 column mat...

...;d like to model individual growth curves (aim is to study asymptotes and inflection points) with nlme according to Pinheiro & Bates 2000: first using nlsList to generate individual curves and then nlme to study the parameters and fixed effects. The data is structured to two levels. I have broods and individuals within the broods. Problems arise if I specify the groupedData object to have two levels. Running of the nlme gives me an error message "can't run the model with multiple levels", or something alike.. Is there a way around this or should I start looking fo another...

...0.6 200126202511 25 0 0.4 200226100311 26 1 0.6 200226100411 27 1 0.4 200226100611 28 1 0.4 200226126011 29 1 0.4 200226203712 30 2 0.6 200227220313 With the following model; lmer(a~b + (1|c), family=poisson, data=tab), What I want to do is to see if number of recruits (a) is dependent on the brood sex ratio (b) including brood identity (c) as random factor. However, I get the following error message; lmer(a~b + (1|c), family=poisson, data=tab) Error in devAGQ(PQLpars, 1) : Unable to invert singular factor of downdated X'X In addition: Warning messages: 1: optim or nlminb returned mess...

Dear All I would need to perform a MANOVA with both fixed (group, sex, group*sex) and random (brood) effects. I wonder if this is at all possible and if R does that. At the moment, I only know that I can run a classic MANOVA with R. Thank you David ______________________________________________ David Costantini, PhD http://www.davidcostantini.it NERC Postdoctoral research associate Institu...

...48) Biweekly Lower 90% Confidence Interval ------------?? -537--------- -549 -------------35,097 Biweekly Total -------------1,425 ----------------------------402 -----------------------------296,085 Biweekly Upper 90% Confidence Interval ----------3,388 --------------1,353 -------------557,074 Brood-year? Lower 90% Confidence Interval ---------------2,578,499 ---------------74,306 ------------2,249,920 Brood Year Total ----------4,455,877------------------------ 314,206 -----------------------7,347,719 Brood-year Upper 90% Confidence Interval ---------------6,333,255 --------------541,552 --...

...this file to your own computer tiff(filename = "C:\\Documents and Settings\\sheppardj\\Desktop\\ Figure 6b.tif", width=3200, height=3200, units = "px", res = 800) par(mfrow=c(1,1)) par(mar=c(6,6,2,2)) plot(x2$mod.avg.pred~new.data2$RANK,cex.main=2,main="", ylab="Brood Survival",type="b",ylim=c(0:1), xlab="Male Plumage Score", pch=17, cex=1.5,cex.axis=2,cex.lab=2.5) points(x3$mod.avg.pred ~ new.data3$RANK, pch=19, col="gray45", cex=1.5, type="b") lines(new.data2$RANK, x2$mod.avg.pred + x2$uncond.se,lwd=2, lty=2) lines(...

...en=false, colorlinks=true, linkcolor=webblue]{hyperref} \definecolor{webgreen}{rgb}{0, 0.5, 0} % less intense green \definecolor{webblue}{rgb}{0, 0, 0.5} % less intense blue \definecolor{webred}{rgb}{0.5, 0, 0} % less intense red \usepackage[all]{hypcap} \pdfbookmark[1]{Contents}{table} \title{BROOD-YEAR 2007 WINTER CHINOOK JUVENILE PRODUCTION} \author{Felipe D. Carrillo} \date{January 5, 2009} \pagestyle{headings} \parskip 7.2pt \begin{document} \setkeys{Gin}{width=1.1\textwidth} \maketitle \tableofcontents The hyperlink of table 1 doesn't work!!!! but the hyperlink of table 2 works O...