search for: bioinformatique

I am looking for a package that allow to plot 3D set of points (x, y, z) ? Can someone help me to find it ? thank for help anne -- Anne BADEL-CHAGNON Email:badel at urbb.jussieu.fr Equipe de Bioinformatique Mol?culaire, Universite Paris 7 Tour 53, 1er etage, case 7113 Tel : 01.44.27.77.14 75251 Paris cedex 05 Fax : 01.43.26.38.30 -------------- next part -------------- An HTML attachment was scrubbed... URL: https://stat.ethz.ch/pipermail/r-help/attachments/20000418/ddea515d/att...

Hi, Does anybody know a function to simulate a Markov chain given a probability transition matrix and an initial state ? Thanks. Philippe -- -------------------------------------------------- Philippe Hup? Institut Curie - Equipe Bioinformatique 26, rue d'Ulm - 75005 PARIS France +33 (0)1 42 34 65 29 Philippe.Hupe at curie.fr <mailto:Philippe.Hupe at curie.fr>

...time( for (i in 1:(M-1)) {C <- C* c(a[i],a[i+1])} ) By the way, I'm using R-2.7.2 on Win XP and/or Fedora Linux. Thank's in advance for any hints, Wolfgang Raffelsberger . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Wolfgang Raffelsberger, PhD Laboratoire de BioInformatique et G?nomique Int?gratives CNRS UMR7104, IGBMC 1 rue Laurent Fries, 67404 Illkirch Strasbourg, France

...kages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] gplots_2.12.1 gdata_2.13.2 loaded via a namespace (and not attached): [1] bitops_1.0-6 caTools_1.16 gtools_3.3.0 KernSmooth_2.23-10 Thanks, Elodie -- -- Elodie Chapeaublanc IE Bioinformatique ?quipe Oncologie Mol?culaire Institut Curie - UMR 144 - CNRS 26 rue d'Ulm - 75248 Paris Cedex 05 Tel: +33 1 56 24 63 57 Email: elodie.chapeaublanc at curie.fr

...file there is a line with the following: file:line:error style messages enabled it is just the summary of the option used when running pdflatex and then an error is systematically reported. If you have any idea where the problem comes from? Thanks, Philippe -- Philippe Hup? UMR 144 - Service Bioinformatique Institut Curie Laboratoire de Transfert (4?me ?tage) 26 rue d'Ulm 75005 Paris - France Email : Philippe.Hupe@curie.fr T?l : +33 (0)1 44 32 42 75 Fax : +33 (0)1 42 34 65 28

...gate with the median function but I get the following error: Error in FUN(X[[1]], ...) : Argument "INDEX" When I replace median by mean, it works perfectly Can someone tell me where the problem comes from? Thx I am running R 2.0.0 on SunOS 5.9 -- Philippe Hup?? UMR 144 - Service Bioinformatique Institut Curie Laboratoire de Transfert (4??me ??tage) 26 rue d'Ulm 75005 Paris - France Email : Philippe.Hupe at curie.fr T??l : +33 (0)1 44 32 42 75 Fax : +33 (0)1 42 34 65 28

...GOHyperG(myLL) Error in mget(x, env = GOTERM, ifnotfound = NA) : recursive default argument reference In fact first I tried this function with my locusId ' list (with affymetrix hgu133plus2), but I had the same error... Any help is appreciated Regards, Sabrina Sabrina Carpentier Service Bioinformatique Institut Curie - Bat. Trouillet Rossignol (4e étage) 26 rue d'Ulm - 75248 Paris Cedex 5 - FRANCE Tel : +33 1 42 34 65 21 [[alternative HTML version deleted]]

...methods [8] base other attached packages: [1] svSocket_0.9-5 svIO_0.9-5 R2HTML_1.58 svMisc_0.9-5 svIDE_0.9-5 loaded via a namespace (and not attached): [1] tools_2.6.0 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Wolfgang Raffelsberger, PhD Laboratoire de BioInformatique et G?nomique Int?gratives CNRS UMR7104, IGBMC 1 rue Laurent Fries, 67404 Illkirch Strasbourg, France Tel (+33) 388 65 3300 Fax (+33) 388 65 3276 wolfgang.raffelsberger at igbmc.u-strasbg.fr

...h_France.1252;LC_NUMERIC=C;LC_TIME=French_France.1252 attached base packages: [1] stats graphics grDevices utils datasets methods base Thank's in advance, Wolfgang . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Wolfgang Raffelsberger, PhD Laboratoire de BioInformatique et G?nomique Int?gratives CNRS UMR7104, IGBMC, 1 rue Laurent Fries, 67404 Illkirch Strasbourg, France Tel (+33) 388 65 3300 Fax (+33) 388 65 3276 wolfgang.raffelsberger (at) igbmc.fr

...other attached packages: [1] RODBC_1.2-4 svSocket_0.9-5 svIO_0.9-5 R2HTML_1.59 svMisc_0.9-5 svIDE_0.9-5 loaded via a namespace (and not attached): [1] tools_2.8.1 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Wolfgang Raffelsberger, PhD Laboratoire de BioInformatique et G?nomique Int?gratives CNRS UMR7104, IGBMC 1 rue Laurent Fries, 67404 Illkirch Strasbourg, France Tel (+33) 388 65 3300 Fax (+33) 388 65 3276 wolfgang.raffelsberger (at) igbmc.fr

...If I do the same thing with paste paste("Hello ","\"World\"") it does not work since \" seems to be not recognized. So what is the trick to do that. Thanks, Philippe -- -------------------------------------------------- Philippe Hup? Institut Curie - Equipe Bioinformatique 26, rue d'Ulm - 75005 PARIS France +33 (0)1 44 32 42 75 Philippe.Hupe at curie.fr <mailto:Philippe.Hupe at curie.fr>

...l referencing errors. No output written to R.bin collect2: ld returned 1 exit status Thank's in advance for all hints how we could overcome this problem, Wolfgang . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Wolfgang Raffelsberger, PhD Laboratoire de BioInformatique et G?nomique Int?grative IGBMC 1 rue Laurent Fries, 67404 Illkirch Strasbourg, France Tel (+33) 388 65 3300 Fax (+33) 388 65 3276 http://www-bio3d-igbmc.u-strasbg.fr/~wraff wolfgang.raffelsberger at igbmc.u-strasbg.fr

...could identify the libPath for a given user and by which argument added to R.exe I could allow accessing these libraries, too ? Thanks? in advance, Wolfgang Raffelsberger . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Wolfgang Raffelsberger, PhD Laboratoire de BioInformatique et G?nomique Int?gratives IGBMC 1 rue Laurent Fries, 67404 Illkirch Strasbourg, France Tel (+33) 388 65 3300 Fax (+33) 388 65 3276 wolfgang.raffelsberger at igbmc.u-strasbg.fr

...rrect this? Thanks in advance, Eduardo Rocha PS- I also tried the version 64.0, but had the same error. -- ####################################################################### Eduardo Rocha Institut Pasteur, Unite Regulation de l'Expression Genetique & Universite Paris VI, Atelier de Bioinformatique erocha at abi.snv.jussieu.fr Tel/Fax:(33-1) 44 27 65 36 / 44 27 63 12 ####################################################################### -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html S...

I am looking for a "multiple discriminant analysis" function It seems to be called DISCR in Splus, but I can't find it in R, and R-packages. Thank for your help -- Anne BADEL-CHAGNON Email:badel at urbb.jussieu.fr Equipe de Bioinformatique Mol?culaire, Universite Paris 7 Tour 53, 1er etage, case 7113 Tel : 01.44.27.77.14 75251 Paris cedex 05 Fax : 01.43.26.38.30 -------------- next part -------------- An HTML attachment was scrubbed... URL: https://stat.ethz.ch/pipermail/r-help/attachments/20000218/35c6ac9c/att...

> Well, that is in all good texts on R, together with the > solution: drop=FALSE. See ?"[" for the on-line details. OK. Thank you a lot. Now patched cclust and clustIndex work fine for 1D case. BTW, why not to apply the "drop=F" to these functions? I guess other users need 1D case as well. kind regards, Valery A.Khamenya

Hello, my data is an ordered list of observations where each observation is either of condition "efficient" (coded as 1) or "non-efficient" (0) as e.g. No. Obs Condition 1 1.1 0 2 1.2 1 3 1.4 1 4 1.5 0 5 2.5 1 etc. My goal is to plot a single line with lty='o' but different symbols for either condition whenever condition is 1 or 0, i.e. on the x-axis the

...nclude the jpeg image onto a html page and get all the information about each point when the mouse button is pressed. The indentify() can do it but on the window device... Thanks for any idea. Philippe -- -------------------------------------------------- Philippe Hup? Institut Curie - Equipe Bioinformatique 26, rue d'Ulm - 75005 PARIS France +33 (0)1 42 34 65 29 Philippe.Hupe at curie.fr <mailto:Philippe.Hupe at curie.fr>

...so that if I plot the following rectangle : rect(1.5,1.5, 1.5+SIZE1, 1.5+SIZE2) then the size of this square is exactely the same as the one of the symbols that have been plotted. Thanks for any idea. -- -------------------------------------------------- Philippe Hup? Institut Curie - Equipe Bioinformatique 26, rue d'Ulm - 75005 PARIS France +33 (0)1 42 34 65 29 Philippe.Hupe at curie.fr <mailto:Philippe.Hupe at curie.fr>

...is not of mode character Error in buildVignettes(dir = ".") : Error: chunk 3 Error in pmatch(x, table, duplicates.ok) : argument is not of mode character Execution halted I use R-2.0.1 under debian linux 2.6.9 Thanks for any idea Philippe -- Philippe Hup? UMR 144 - Service Bioinformatique Institut Curie Laboratoire de Transfert (4?me ?tage) 26 rue d'Ulm 75005 Paris - France Email : Philippe.Hupe at curie.fr T?l : +33 (0)1 44 32 42 75 Fax : +33 (0)1 42 34 65 28