search for: biogeochemistri

Displaying 20 results from an estimated 35 matches for "biogeochemistri".

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2009 Mar 27
3
Ploting a matrix
Hi evrybody, in a matrix consisting of 49 columns, I would like to plot all columns against the first in 48 different graphs. Can you help me? Thank you in advance Sebastian -- *************************************************************************************************************** Dipl. Biol. Sebastian Krug PhD - student IFM - GEOMAR Leibniz Institute of Marine Sciences Research
2009 Mar 26
2
Tables
Hi, I am just starting using R. Hence, sorry for asking probably rather easy questions. I used "read.table" to bring an .txt Table to R. Unfortunately the columns do not have the same length. I tried "fill=TRUE", to fill the blank space with "na". In a certain kind of way it worked, but befor filling the spaces it moved data from later columns to the first: 1
2004 Nov 12
2
whether R can import netcdf file format data ?
Hello R Users, Whether 'R' can import Netcdf format data files ?? Any package in 'R' that can help me on this front ?? Many thanks in advance, Regards, Yogesh -- =========================================== Yogesh K. Tiwari, Max-Planck Institute for Biogeochemistry, Postfach 10 01 64, D-07701 Jena, Germany Office : +49 3641 576376 Fax : +49 3641 577300 Home : +49
2005 Oct 25
1
how to increase the font size of axis data
Hello R Users, I am a new user to R. When we make a simple plot then how to increase the font size of the data at the each axis. Many thanks, Kind regards, Yogesh -- =========================================== Yogesh Tiwari, Max-Planck Institute for Biogeochemistry, Hans-Knoell Strasse 10, D-07745 Jena, Germany Office : 0049 3641 576 376 Home : 0049 3641 223 163 Fax : 0049 3641
2007 Jun 26
3
inter-rater agreement index kappa
Is there a function that calculates the inter-rater agreement index (kappa) in R? Thanks ../Murli [[alternative HTML version deleted]]
2008 Nov 18
1
reshape question
Hi, It's probably a simple issue but I'm struggling with that. I'll use the example shown in the help page. head(Indometh) wide <- reshape(Indometh, v.names="conc", idvar="Subject", timevar="time", direction="wide") head(wide) reshape(wide, idvar="Subject", varying=list(2:12), v.names="conc",
2016 Aug 30
1
cat(..., append=TRUE) on sftp share
Dear R-SIG-Debian Team, r-devel sent me to you. Situation: Ubuntu 16.04, R-3.3.1, and a file in a folder mounted with sftp via gnome virtual file system. for(i in 1:10){cat(i,file = "/run/user/1001/gvfs/sftp:host=server/path on server/test2",append = TRUE)} gives a file that reads |10| and not |12345678910| Further checking: * A mapped network drive on Windows 7 and
2007 May 14
1
cross-validation / sensitivity anaylsis for logistic regression model
Hi, I have developed a logistic regression model in the form of (factor_1~ numeric + factor_2) and would like to perform a cross-validation or some similar form of sensitivity analysis on this model. using cv.glm() from the boot package: # dataframe from which model was built in 'z' # model is called 'm_geo.lrm' # as suggested in the man page for a binomial model: cost <-
2006 May 23
1
standardization of values before call to pam() or clara()
Greetings, Experimenting with the cluster package, and am starting to scratch my head in regards to the *best* way to standardize my data. Both functions can pre-standardize columns in a dataframe. according to the manual: Measurements are standardized for each variable (column), by subtracting the variable's mean value and dividing by the variable's mean absolute deviation. This
2005 Apr 01
3
plot axis appearance problem
Hello, When I plot any data with simple plot command in R, for example :- plot(time,co2,ylim=c(350,380),xlim=c(1993,2003),xlab=NA,ylab=NA,type="p",col=5) Then the first value of x-axis(350) and y-axis(1993) never starts from origin, always they sifted from the origin. Is there any command that I can correct this in the ploted figure and both the axis values start from origin.
2005 Jan 14
1
how to produce 2-d color plots in R
Hello 'R' Users, I am very new on 'R', so excuse me if I ask something wrong. I have ASCII data and the colums of the data are looks like :- !------------------------- time,yr,mo,dy,hr,min,sec,lat,lon,ht,co2obs,sigma,co2model -- - -- !---------------------------- Each column has data value. Now I want to produce 2-d color maps, for example the plot should look like :- on
2007 Sep 20
2
Superimposing vector polygons over raster grid in a plot
Hello: I would like to superimpose vector polygons (state outlines) from a Shape file on top of a satellite image, imported into a SpatialGridDataFrame from GEOTIFF via gdal_translate and readGDAL. When I plot polygon and point shape files in R, into SpatialPointDataFrame and SpatialPolygonDataFrame, the two feature sets line up geographically, so it seems logical that a SpatialGridDataFrame
2006 Oct 04
2
compiling rgdal package on windows / macos
Greetings: As I am not a windows user, I cannot try this: is it possible to install rgdal on windows without having to compile it from source ? Compilation on MacOS is within my abilities, however each time i try and install the rgdal package it dies complaining that it cannot find gdal-config --- which was recently installed with GRASS. I have updated my PATH environment variable, logged
2007 Feb 27
1
prop.test or chisq.test ..?
Hi everyone, Suppose I have a count the occurrences of positive results, and the total number of occurrences: pos <- 14 total <- 15 testing that the proportion of positive occurrences is greater than 0.5 gives a p-value and confidence interval: prop.test( pos, total, p=0.5, alternative='greater') 1-sample proportions test with continuity correction data: 14 out of
2008 May 07
3
function in nls argument
Greetings R users, maybe there is someone who can help me with this problem: I define a function "optim.fun" and want as output the sum of squared errors between predicted and measured values, as follows: optim.fun <- function (ST04, SM08b, ch2no, a, b, d, E) { predR <- (a*SM08b^I(2)+b*SM08b+d)*exp(E*((1/(283.15-227.13))-(1/(ST04+273.15-227.13)))) abserr
2008 Dec 19
2
error bars
Dear Help I'm new to R (from matlab)...using windows XP. I've tried to work out, to no avail, 4 things: 1) rotating the numbers on axes...something to do with par(str) ?? 2) how to close a window having opened one e.g. windows(7,7) 3) how to manipulate the key (e.g. dots, lines etc) on the legend. Using pch just gives me the same key for all functions on a plot. i.e. legend
2005 Nov 28
1
overlay additional axes
Greetings, I am trying to add an extra labled axis in position 3 (top x-axis), with numbers that do not match up with the existing axes. Surely this must be possible, and I am just doing it incorectly. So far I have tried the following: #make a plot plot(TIK, type="l", cex=.25, xlim=c(2,32), ylim=c(0,1600)) #try and add a new axis with different numbers in position 3
2006 Nov 07
0
evaluation of 2 matrices: categorical comparison
Greetings, I have two matrices, read in from raster data stored in GRASS. Each matrix represents the output of a aggregation process on categorical data (Nomial / Ordinal) - derived from imagery. I have compared these two data by the following methods: ***** pretending the data is continuous approaches (flawed i am sure...) 1. computing a difference map by computing the absolute difference
2007 Feb 14
1
model diagnostics for logistic regression
Greetings, I am using both the lrm() {Design} and glm( , family=binomial()) to perform a a logisitic regression in R. Apart from the typical summary() methods, what other methods of diagnosing logistic regression models does R provide? i.e. plotting an 'lm' object, etc. Secondly, is there any facility to calculate the R^{2)_{L} as suggested by Menard in "Applied Logistic
2006 Oct 25
1
any good way to convert sp class objects to splancs object
Greetings: are there any simple ways to convert an sp class object to a splancs ppp class object, outside of reading the coordinates and computing a bounding box? cheers, -- Dylan Beaudette Soils and Biogeochemistry Graduate Group University of California at Davis 530.754.7341