search for: biodiversityr

I have installed R on windows 7 machine. In the install packages I can't find BiodiversityR package. I was wondering if I can get some help with the installation process. Thanks. -- View this message in context: http://r.789695.n4.nabble.com/installation-of-BiodiversityR-package-tp3816807p3816807.html Sent from the R help mailing list archive at Nabble.com.

Dear all, I run R 2.7.2 under Windows and integrated BiodiversityR sucessfully into the R commander. Most functions of BiodiversityR run but others (like "analysis of species as response") produce blank windows and the message: Error in get(x, envir = RcmdrEnv(), mode = mode, inherits = FALSE) : Variable "operatorFont" nicht gefunden What&...

Dear List! I installed R and quite a few packages I use. When I try to start BiodiversityR the library loads without any problems but GUI do not start. Rcmdr loads without any problems. I am using R 2.13.0 64 bit. Downgrade to R 2.12.2 works. Thanks, Janos

Hi, I get the following error when trying to load the BiodiversityR package > library(> library(BiodiversityR) Loading required package: tcltk tcltk DLL is linked to '/opt/X11/lib/libX11.6.dylib' Error: package or namespace load failed for ?tcltk?: .onLoad failed in loadNamespace() for 'tcltk', details: call: fun(libname, pkgname) error:...

Sourced: BiodiversityGUI.R Error : .onAttach failed in attachNamespace() for 'Rcmdr', details: call: get(Menus[m, 5]) error: object 'chisquareDistributionPlot' not found Error in BiodiversityRGUI() : needs Rcmdr Hi Guys, I am from China, I wanna use Biodiversity R, but it can't work. Can somebody help me? Thanks -- View this message in context: http://r.789695.n4.nabble.com/The-BiodiversityR-can-t-work-tp3650199p3650199.html Sent from the R help mailing list archive at Nabble...

Hello, I having trouble running the CAPdiscrim function located in biodiversityR. My data tables are as follows: community data frame (called "spdata") Species1... Speciesn site1.. site2.. siten with abundance data as values. Site names are row names. and environmental data (called "envdata") year elevation site1... site2......

Dear Gabor You got solution for your problem? "I have just got a laptop with win 7 64 bit installed on it. I installed R and quite a few packages I use. When I try to start BiodiversityR the library loads without any problems but when starting the GUI it gives me the following error message: Sourced: BiodiversityGUI.R Error : .onAttach failed in attachNamespace() for 'Rcmdr', details: call: get(Menus[m, 5]) error: object 'chisquareDistributionPlot' not found Er...

Estimados, Soy usuario de Mac y desde que instale la nueva version de R y Rstudio, no puedo cargar el paquete Rcmdr. Lo miso me pasa con el paquete BiodiversityR. Alguien tiene alguna posible solución? Desde ya muchas gracias. Saludos, Luis > library(Rcmdr) Loading required package: RcmdrMisc Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : there is no package called 'data.table' Error: package ...

Hi all: I am trying to use the BiodiversityR package in Rcommander since I need to box-cox transform some data. However, even when trying with the example files, I get this error just after selecting the box cox transformation in the Menu, and Rcommander and Rstudio just shut down. What is it? What could I do? Thanks a lot The instruction a...

Greetings dear friends. Please, I really find problems having the program read my datasets (here attached). Have converted datasets to csv, imported but always not reaching the target. Would be very happy if some one out can help me on time. Thanks Ndoh Mbue Innocent International corporation office China University of Geosciences 388 Lumo road 430074, Wuhan-China Tel: 0086 27 67885947/0086

...tcltk) Loading Tcl/Tk interface ... done Warning message: In fun(libname, pkgname) : couldn't connect to display "/tmp/launch-pCcdvk/:0" _X11TransSocketINETConnect() can't get address for /tmp/launch-pCcdvk/:6000: nodename nor servname provided, or not known I want to run BiodiversityR. Which runs, but ultimately I get an error. > library(BiodiversityR) Loading required package: vegan Loading required package: permute This is vegan 2.0-5 > BiodiversityRGUI() Loading required package: Rcmdr Error : .onAttach failed in attachNamespace() for 'Rcmdr', details:...

...alityexcellence.es/> El 15 de febrero de 2017, 15:58, Luis E <luisespo00 en hotmail.com<mailto:luisespo00 en hotmail.com>> escribió: Estimados, Soy usuario de Mac y desde que instale la nueva version de R y Rstudio, no puedo cargar el paquete Rcmdr. Lo miso me pasa con el paquete BiodiversityR. Alguien tiene alguna posible solución? Desde ya muchas gracias. Saludos, Luis > library(Rcmdr) Loading required package: RcmdrMisc Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : there is no package called 'data.table' Error: package ...

Estimados, Muchas gracias por sua ayuda, ya pude instalar data.table y esta funcionando. Respecto al paquete biodiversityR, no se porque ahora no me corre. El script esta correcto, pero no se porque me tira error. > fase<-diversitycomp(biobsp, y=biopcat,factor1="Fase",index="richness",method=?s") Error in diversitycomp(biobsp, y = biopcat, factor1 = "Fase", index = "ric...

...es scores not available? I have read from internet resources that in principle I could obtain the trait ("species") scores to plot them in the ordination but my attempts have been unsuccessful. I have tried using the function ?wascores? in package vegan and ?add.spec.scores? in package BiodiversityR. For this purpuse I have created a new species x traits table where factor traits were coded into dummy variables and all integer variables (including binary) were coerced to numeric variables. Here are the codes used and the error messages I have got: ?> NMDSgowdis<- metaMDS(SpeciesGowdis...

Hola amigos: Quisiera saber si alguna opción en R del software primer para análisis de datos multivariantes en ecología Gracias Javier [[alternative HTML version deleted]]

...m trying to compare species richness between various datasets (locations) using species accumulation curves (Chapter 4, page 54 in Tree diversity analysis<http://www.worldagroforestry.org/treesandmarkets/tree_diversity_analysis.asp>by Kindt & Coe). To accomplish this I'm using package BiodiversityR. My data is comprised of species community (PoCom) (10 locations with 83 species) and environmental factors (PoEnv) (10 locations with 17 factors). In attempt to calculate the function (accumcomp) I receive the following error. I can not imagine how a 10x83+10x17 matrix can grow to a GB or more. Un...

Hi, I would like to calculate the RELATIVE euclidean distance. Is there a function in R which does it ? (I calculated the abundance of 94 chemical compounds in secretion of several individuals, and I would like to have the chemical distance between 2 individuals as expressed by the relative euclidean distance. Some compounds are in very low abundance whereas others are in high abundance,

Hi all Does anyone know if there are any R packages available for creating UML class and object diagrams in R (suitable for use with Latex)? I'm considering developing such a system... Note, I'm aware there are Latex packages (so no one needs to state the obvious). On a side issue I'm thinking about (mostly) abandoning the class system I mentioned earlier. Thank you to Martin

Dear colleagues. I wonder if anybody knows about a procedure in R to calculate the Berger-Parker index and the Brillouin Diversity index. I searched the net but did not find anything good about it. Thanks a lot for any help Mayo, Elvira. [[alternative HTML version deleted]]

Hello, I'm trying plot points in an NMDS according to a factor with two levels: fig<-ordiplot(canod.sol, type="none",cex.axis=0.9,cex.lab=0.1,pty="m",tck=-0.01) ordisymbol(fig, y = hab, factor = "habitat", rainbow = T,col = env, legend = F) This gets me part of the way - It produces a plot with blue triangles for the first factor level and red circles