search for: bibtex

Hello, I'm running R2.10, Eclipse, StatEt and MikTex 2.8 to create Sweave documents, and everything seems to work great, until today... I was trying to add citations from a Bibtex file, but I just got [?] citations. However, if I open the .tex file that StatEt created in MikTex and run the latex+bibtex+pdflatex command, the citations are present. Does anyone know how to either configure StatEt to run bibtex or to somehow fix this ? Thanks Paul.

I am working a Bibtex database for my school using Rails and I need some idea on how to manage the bibtex types. I crated an Author and Publications model and put has_and_belongs_to_many relationship between them. The user model basically is like this: class User < ActiveRecord::Base has_and_belongs_to_m...

== Summary == * Problem: BibTeX entries extracted from R packages via citation() require too much manual editing to be of general use. * Proposal: Date: fields should be made mandatory in package DESCRIPTION files, perhaps beginning with warnings from R CMD check * Proposal: Package authors should be encouraged to use a (new)...

Back in 2010 I raised this issue, and there was some discussion, https://stat.ethz.ch/pipermail/r-devel/2010-November/058987.html The goal, then, as now is to have a way to produce a bibtex-clean .bib file (i.e., not requiring manual editing except in unusual circumstances) reflecting installed packages for use in writing where one often needs/wants to cite all packages used in a given article. Achim wrote the function below which largely does this job, quite nicely now that mos...

Dear all, firstly, I want to thank Thomas Leitner and the community for the great program webgen! I''m using it for a long time now. I developed a small extension that allows you to specify a BibTeX-file from which a Webgen page containing a list of publications is generated. You can see two examples here: http://michaelkoester.de/activities.html http://michaelkoester.de/publications.html The source code as well as the documentation can be found here: http://michaelkoester.de/bibtex-extensio...

Hi is there an easy and fast way, to generate a BibTeX file of all installed / loaded packages and R? I know about toBibtex(citation()) to extract the BibTeX for a single package, but how can I generate a file containg citations for all installed / loaded packages? Cheers, Rainer -- NEW GERMAN FAX NUMBER!!! Rainer M. Krug, PhD (Conservation Ecolo...

I have two versions of a bibtex database which have gotten badly out of sync. I need to find find all the entries in bib2 which are not contained in bib1, according to their bibtex keys. But I can't figure out how to extract a list of the bibentry keys in these databases. A minor question: Is there someway to prevent read....

Dear Colleagues, I would like to provide a CITATION file for my package nat.nblast [1]. I have the correct citation in BibTeX format [2]. How can I convert this BibTeX to the format needed by R for a package CITATION file (I have a lot of other packages needing citations ...). I think what I need is the opposite of RefManageR::toBiblatex [3]. This seems like it should be a common need, so I feel sure I must be missing...

In Henric's recent post, he included this output: @BOOK{R:Harrell:2001, AUTHOR = {Frank E. Harrell}, TITLE = {Regression Modeling Strategies, with Applications to Linear Models, Survival Analysis and Logistic Regression}, PUBLISHER = {Springer}, YEAR = 2001, NOTE = {ISBN 0-387-95232-2}, URL =

Dear List, While trying to define a customised CITATION file for a package, following R-exts, I realised that if I use only one 'citEntry' I got both a text description and a BibTex entry for the package, as for the 'nlme' package: -------------------------- citation('nlme') To cite package 'nlme' in publications use: Jose Pinheiro, Douglas Bates, Saikat DebRoy, Deepayan Sarkar and the R Development Core Team (2012). nlme: Linear and Nonlinear...

Dear all, I was hoping someone may know a way of running texi2dvi while ignoring bibtex errors, or any other work around (such as not running bibtex at all, if possible). The context is that I have an R program that does some calculations and writes a table into various folders, one per country for several countries. I have a latex file that takes the table as an input, and this late...

On Thu, 30 May 2019, Dr Gregory Jefferis wrote: > Dear Colleagues, > > I would like to provide a CITATION file for my package nat.nblast [1]. > > I have the correct citation in BibTeX format [2]. How can I convert this > BibTeX to the format needed by R for a package CITATION file (I have a > lot of other packages needing citations ...). (1) You can use read.bib() from the "bibtex" package to read the .bib file containing the relevant reference. (2) This giv...

...file to the heplots package--- appended below. From the document ion for ?CITATION, there can be *one or more* calls to citEntry() within the CITATION file, and each should produce an object of class "citation". With just a single citEntry(), citation produces the expected output, with BibTeX entry: > citation("heplots") To cite package 'heplots' in publications use: John Fox and Michael Friendly and and Georges Monette (2008). heplots: Visualizing Tests in Multivariate Linear Models. R package version 0.8-4. URL http://CRAN.R-project.org/package=heplots...

...;CHARSXP' not a 'NULL' A full example is further below with the system macro \CRANpkg{}. In this example it doesn't make sense to use empty argument but the error is not specific to this particular macro. ------ Georgi Boshnakov Create an Rd file containing system macro \CRANpkg{bibtex}, parse_Rd() is ok: ================= fn <- tempfile() writeLines("\\name{dummyfun} \\alias{dummyfun} \\title{Dummy title} \\description{Dummy description} \\usage{ dummyfun(x, ...) } \\arguments{ \\item{x}{a value.} \\item{\\dots}{further arguments.} } \\details{ \\CRANpkg{bibtex}...

The bibtex citations provided by citation() do not work all that well in cases where there is no printed document to reference: (1) A version field is needed, as the note field is required for other purposes, currently trying to sort out nuances that cannot be sorted out in the author list (author, compiler,...

Dear all, I'm a big fan and happy user of the Sweave package for routine reporting. From inside a .Rnw script, I'd like to produce the references in bibtex format for each package loaded in the environment, write them in a .bib file and load them back from the \bibliography{bibliography} statement. Is this feasible? Any help would be greatly appreciated! Thanks in advance, Paolo

Dear all, Is there an elegant way to add citations of packages when using Sweave? Ideally I'd like a function which creates a Bibtex-file with the packagenames as keys. The idea is to use \cite{packagename} or \cite{R} in LaTeX. I know you can get the Bibtex entry with toBibtex(citation("packagename")). But after updating R or a package one needs to update the bib-file too. When trying to automate this I came up with...

...gt; > A full example is further below with the system macro \CRANpkg{}. In this example it doesn't make sense to use empty argument but the error is not specific to this particular macro. > > ------ > Georgi Boshnakov > > > Create an Rd file containing system macro \CRANpkg{bibtex}, parse_Rd() is ok: > > ================= > fn <- tempfile() > writeLines("\\name{dummyfun} > \\alias{dummyfun} > \\title{Dummy title} > \\description{Dummy description} > \\usage{ > dummyfun(x, ...) > } > \\arguments{ > \\item{x}{a value.} > \\i...

The following citEntry includes a url with %3A and other encodings citEntry(entry="article", title = "Software for Computing and Annotating Genomic Ranges", author = personList( as.person("Michael Lawrence" )), year = 2013, journal = "{PLoS} Computational Biology", volume = "9", issue =

Sorry for the off-topic question, but I know there are some talented LaTeX users out there. Which bibliography style gives only the year in text citations (e.g "for further details, see Anderson (1992)" )? Thanks Jason -- Indigo Industrial Controls Ltd. http://www.indigoindustrial.co.nz 64-21-343-545 jasont at indigoindustrial.co.nz