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All R experts, How do I fit a dynamic Random effects model with a binary dependent variable in R Thanks JCM [[alternative HTML version deleted]]

...n general? I haven't found a formula combining (z-1) and I(x>0) that works, although I can imagine there is one. thanks Ben Bolker -- Ben Bolker Associate professor, Biology Dep't, Univ. of Florida bolker at ufl.edu / www.zoology.ufl.edu/bolker GPG key: www.zoology.ufl.edu/bolker/benbolker-publickey.asc -------------- next part -------------- A non-text attachment was scrubbed... Name: signature.asc Type: application/pgp-signature Size: 261 bytes Desc: OpenPGP digital signature URL: <https://stat.ethz.ch/pipermail/r-help/attachments/20091102/44e20ea0/attachment-0002.bin>

...e: http://www.rcees.ac.cn/ > > > > [[alternative HTML version deleted]] > > -- Ben Bolker Associate professor, Biology Dep't, Univ. of Florida bolker at ufl.edu <mailto:bolker at ufl.edu> / people.biology.ufl.edu/bolker GPG key: people.biology.ufl.edu/bolker/benbolker-publickey.asc -- Ben Bolker Associate professor, Biology Dep't, Univ. of Florida bolker at ufl.edu / people.biology.ufl.edu/bolker GPG key: people.biology.ufl.edu/bolker/benbolker-publickey.asc -------------- next part -------------- A non-text attachment was scrubbed... Name: signature.asc...

...ode{shape1} and \code{shape2} are the more traditional parameterization in terms of the parameters of the per-trial probability distribution. } -- Ben Bolker Associate professor, Biology Dep't, Univ. of Florida bolker at ufl.edu / www.zoology.ufl.edu/bolker GPG key: www.zoology.ufl.edu/bolker/benbolker-publickey.asc -------------- next part -------------- A non-text attachment was scrubbed... Name: signature.asc Type: application/pgp-signature Size: 261 bytes Desc: OpenPGP digital signature URL: <https://stat.ethz.ch/pipermail/r-devel/attachments/20090817/fa30dfcf/attachment.bin>

...quot;f" not found -- because model.matrix ## evaluates in the parent environment of params ... try(nrow(with(cc,model.matrix(params)))) -- Ben Bolker Associate professor, Biology Dep't, Univ. of Florida bolker at ufl.edu / www.zoology.ufl.edu/bolker GPG key: www.zoology.ufl.edu/bolker/benbolker-publickey.asc -------------- next part -------------- A non-text attachment was scrubbed... Name: signature.asc Type: application/pgp-signature Size: 261 bytes Desc: OpenPGP digital signature URL: <https://stat.ethz.ch/pipermail/r-devel/attachments/20090809/5c009c7b/attachment.bin>

...) { merge(x,y,by="state",all=TRUE) }, z) but there doesn't seem to be a good reason not to allow it ... cheers Ben Bolker -- Ben Bolker Associate professor, Biology Dep't, Univ. of Florida bolker at ufl.edu / www.zoology.ufl.edu/bolker GPG key: www.zoology.ufl.edu/bolker/benbolker-publickey.asc *** /home/ben/funprog.R.new 2009-06-06 18:30:56.000000000 -0400 --- src/library/base/R/funprog.R 2009-02-12 10:39:32.000000000 -0500 *************** *** 15,21 **** # http://www.r-project.org/Licenses/ Reduce <- ! function(f, x, init, right = FALSE, accumulate = FALSE, ...)...

....g. ! ## levels(res) = [1970-01-01 00:00:00,1970-01-01 12:00:00) ! ## instead of [18000,61200) ! } ! } res } -- Ben Bolker Associate professor, Biology Dep't, Univ. of Florida bolker at ufl.edu / www.zoology.ufl.edu/bolker GPG key: www.zoology.ufl.edu/bolker/benbolker-publickey.asc -------------- next part -------------- A non-text attachment was scrubbed... Name: signature.asc Type: application/pgp-signature Size: 261 bytes Desc: OpenPGP digital signature URL: <https://stat.ethz.ch/pipermail/r-devel/attachments/20091015/ebc04172/attachment.bin>

...187 >> >> http://newton.ex.ac.uk/research/emag >> ______________________________ >> > > > -- > Ben Bolker > Associate professor, Biology Dep't, Univ. of Florida > bolker at ufl.edu / www.zoology.ufl.edu/bolker > GPG key: www.zoology.ufl.edu/bolker/benbolker-publickey.asc -- Ben Bolker Associate professor, Biology Dep't, Univ. of Florida bolker at ufl.edu / www.zoology.ufl.edu/bolker GPG key: www.zoology.ufl.edu/bolker/benbolker-publickey.asc -------------- next part -------------- A non-text attachment was scrubbed... Name: signature.asc Type:...

...ymax=c(means+se))) + scale_x_continuous(name="Year",breaks=1:3) + scale_y_continuous(name="Whatever") -- Ben Bolker Associate professor, Biology Dep't, Univ. of Florida bolker at ufl.edu / www.zoology.ufl.edu/bolker GPG key: www.zoology.ufl.edu/bolker/benbolker-publickey.asc

...(sseed <- attr(S2, "seed")) # seed; RNGkind as attribute stopifnot(identical(S2, simulate(mod1, nsim = 200, seed = sseed))) } -- Ben Bolker Associate professor, Biology Dep't, Univ. of Florida bolker at ufl.edu / www.zoology.ufl.edu/bolker GPG key: www.zoology.ufl.edu/bolker/benbolker-publickey.asc -------------- next part -------------- A non-text attachment was scrubbed... Name: signature.asc Type: application/pgp-signature Size: 260 bytes Desc: OpenPGP digital signature URL: <https://stat.ethz.ch/pipermail/r-devel/attachments/20090212/fb93e658/attachment.bin>

...e} Test {\tt last.warning} <<>>= x <- log(-1) L <- last.warning @ <<>>= L @ \end{document} ================== -- Ben Bolker Associate professor, Biology Dep't, Univ. of Florida bolker at ufl.edu / www.zoology.ufl.edu/bolker GPG key: www.zoology.ufl.edu/bolker/benbolker-publickey.asc -------------- next part -------------- A non-text attachment was scrubbed... Name: signature.asc Type: application/pgp-signature Size: 260 bytes Desc: OpenPGP digital signature URL: <https://stat.ethz.ch/pipermail/r-help/attachments/20090608/1c4c0104/attachment-0002.bin>

...rtically would be another solution, but I'd rather just make the ticks sparser if there were a way to do that ... cheers Ben Bolker -- Ben Bolker Associate professor, Biology Dep't, Univ. of Florida bolker at ufl.edu / www.zoology.ufl.edu/bolker GPG key: www.zoology.ufl.edu/bolker/benbolker-publickey.asc -------------- next part -------------- A non-text attachment was scrubbed... Name: signature.asc Type: application/pgp-signature Size: 261 bytes Desc: OpenPGP digital signature URL: <https://stat.ethz.ch/pipermail/r-help/attachments/20090813/d80b04d7/attachment-0002.bin>

Hi, I havw some porblem in R and i need your help. I have this vector and I want to change it to date. for example G=[05 12 2008] or g=[2] f=[3] y=[2208]

..., ...) UseMethod("summary") <environment: namespace:base> Browse[1]> summary(gm1) Length Class Mode 1 mer S4 -- Ben Bolker Associate professor, Biology Dep't, Univ. of Florida bolker at ufl.edu / www.zoology.ufl.edu/bolker GPG key: www.zoology.ufl.edu/bolker/benbolker-publickey.asc

...w users who have no idea what's wrong, they just selected the repository that was geographically closest to them). cheers Ben Bolker -- Ben Bolker Associate professor, Biology Dep't, Univ. of Florida bolker at ufl.edu / www.zoology.ufl.edu/bolker GPG key: www.zoology.ufl.edu/bolker/benbolker-publickey.asc

...andom number + generation algorithms.} \references{ Becker, R. A., Chambers, J. M. and Wilks, A. R. (1988) \emph{The New S Language}. -- Ben Bolker Associate professor, Biology Dep't, Univ. of Florida bolker at ufl.edu / www.zoology.ufl.edu/bolker GPG key: www.zoology.ufl.edu/bolker/benbolker-publickey.asc -------------- next part -------------- A non-text attachment was scrubbed... Name: signature.asc Type: application/pgp-signature Size: 260 bytes Desc: OpenPGP digital signature URL: <https://stat.ethz.ch/pipermail/r-devel/attachments/20090104/2ab836a3/attachment.bin>

...* * * 18 * * * 19 * * * 20 * * * 21 * * * 22 * * * 23 * * * 24 * * * 25 * * * 26 * * * 27 * * * 28 * * * 29 * * * 30 * * * -- Ben Bolker Associate professor, Biology Dep't, Univ. of Florida bolker at ufl.edu / people.biology.ufl.edu/bolker GPG key: people.biology.ufl.edu/bolker/benbolker-publickey.asc -------------- next part -------------- A non-text attachment was scrubbed... Name: signature.asc Type: application/pgp-signature Size: 261 bytes Desc: OpenPGP digital signature URL: <https://stat.ethz.ch/pipermail/r-devel/attachments/20100106/cb6a0fde/attachment.bin>

...quot;)) [1] "http://mira.sunsite.utk.edu/CRAN/src/contrib" Is this (as it seems to me) a bug? Should I report it as such? -- Ben Bolker Associate professor, Biology Dep't, Univ. of Florida bolker at ufl.edu / people.biology.ufl.edu/bolker GPG key: people.biology.ufl.edu/bolker/benbolker-publickey.asc -------------- next part -------------- A non-text attachment was scrubbed... Name: signature.asc Type: application/pgp-signature Size: 261 bytes Desc: OpenPGP digital signature URL: <https://stat.ethz.ch/pipermail/r-devel/attachments/20100409/f524370f/attachment.bin>

...ely, as specified by \code{alternative}. A confidence interval for the underlying proportion with confidence level as specified by -- Ben Bolker Associate professor, Biology Dep't, Univ. of Florida bolker at ufl.edu / people.biology.ufl.edu/bolker GPG key: people.biology.ufl.edu/bolker/benbolker-publickey.asc -------------- next part -------------- A non-text attachment was scrubbed... Name: signature.asc Type: application/pgp-signature Size: 261 bytes Desc: OpenPGP digital signature URL: <https://stat.ethz.ch/pipermail/r-devel/attachments/20100418/f455c989/attachment.bin>

I have an optimization question that I was hoping to get some suggestions on how best to go about sovling it. I would think there is probably a package that addresses this problem. This is an ordering optimzation problem. Best to describe it with a simple example. Say I have 100 "bins" each with a ball in it numbered from 1 to 100. Each bin can only hold one ball. This optimization is