search for: batch

...st lme is suboptimal here anyway) and ?pdSymm (which has only a trivial example, see later) but have not yet found a successful example of syntax for this particular problem. I am using the pdSymm class to specify a positive definite matrix corresponding to the covariance structure of a random batch effect, and passing this to lme() through the random= argument. To do this, I must set the value= argument of pdSymm. Consider the following simple and self-contained example: library(nlme) # make response and batch data batch.names <- c("A", "B", "C") data.df...

Here's the latest version of the batch mode cleanup patch. Index: batch.c =================================================================== RCS file: /cvsroot/rsync/batch.c,v retrieving revision 1.12 diff -u -r1.12 batch.c --- batch.c 24 Jan 2002 08:09:46 -0000 1.12 +++ batch.c 6 Feb 2002 19:47:57 -0000 @@ -8,55 +8,38 @@ #include &q...

Chris, to put things in the right prespective, you should read (if you haven't done so already) the original paper describing the design behind batch mode. The design and implementation of this functionality goes back to a project called the Internet2 Distributed Storage Infrastructure (I2-DSI). As part of that project, the authors created a modified version of rsync (called rsync+) which had the capability of creating these batch sets fo...

I tried to use BATCH command to run an input file (a simple text file) which contained a few R commands. I first saw the BATCH help page using      > ?BATCH The help page mentioned the Usage as: Batch Execution of RR CMD BATCH [options] infile [outfile] The Detailed section mentioned the following: Use R CMD BAT...

...hot rsync-HEAD-20090220-0710GMT.tar.gz make check is successful but sudo make check fails ------------------------------------------------------------ ----- overall results: 29 passed 3 failed 6 skipped ------------------------------------------------------------ failed FAIL batch-mode FAIL chmod-option FAIL daemon-gzip-upload ============================================================ ./runtests.sh running in /usr/local/src/rsync rsync_bin=/usr/local/src/rsync/rsync srcdir=/usr/local/src/rsync TLS_ARGS= -l -L testuser=root os=Darwin Titan.lo...

I already asked this question before, some time ago (a few months), but got no reply. We're using a backup system based on rsync and batched updates. Quite often I see a situation when rsync refuses to apply next batch with the following messages: applying f0002.rgs-podm.ru 142 (Skipping batched update for "etc/cron.d/sysstat") (Skipping batched update for "etc/default/sysstat") (Skipping batched update for &quot...

Hi Community, I have a question about how to pass command line parameters to R script running in the batch mode. The problem is: there is a banch of data files which are to be processed by R script called from a web-server, i.e. in the batch mode. The web server generates data files and passes their names calling 'R CMD BATCH' one by one for every file. Now the question is how to call 'R...

...free (and look at the weird log messages...) A reboot helped though, but still... :) [this is the normal CentOS4 i686 SMP kernel 2.6.9-5.0.5.ELsmp] May 31 22:31:25 tcs kernel: oom-killer: gfp_mask=0xd0 May 31 22:31:25 tcs kernel: DMA per-cpu: May 31 22:31:25 tcs kernel: cpu 0 hot: low 2, high 6, batch 1 May 31 22:31:25 tcs kernel: cpu 0 cold: low 0, high 2, batch 1 May 31 22:31:25 tcs kernel: cpu 1 hot: low 2, high 6, batch 1 May 31 22:31:25 tcs kernel: cpu 1 cold: low 0, high 2, batch 1 May 31 22:31:25 tcs kernel: cpu 2 hot: low 2, high 6, batch 1 May 31 22:31:25 tcs kernel: cpu 2 cold: low 0,...

Whats the reason that using a batch file can't be used with a remote destination? rsync --read-batch=foo /mysrc remote:/dest gives remote destination is not allowed with --read-batch I need to push the same set of files to about 20 servers and because of firewall rules, the 20 servers cannot pull from the central one. Thank...

Bert, Hi. If you are still interested in your rsync+ project, changes for which have evidently been (and are, perhaps, still being?) submitted to the official, upstream rsync version, you may want to add the following feature, proffered below, in order to conduce a little greater batch mode usage flexibility primarily for those with above average security concerns. Currently (at least in the current, official, stable rsync version), batch mode may only be utilized in a fairly rigid, autocratic, master pushes to slaves mode. Therefore, at least among those slaves with the necess...

HI: I run glusterfs with four nodes, 2x2 Distributed-Replicate. I mounted it via fuse and did some test, it was ok. However when I mounted it via nfs, a problem was found: When I copied 200G files to the glusterfs, the glusterfs process in the server node(mounted by client) was killed because of OOM, and all terminals of the client were hung. Trying to test for many times, I got the

Hi, I am new to R and am still trying to get a grip of it. I have data in this format: Run Lab Batch Y 1 1 1 1 608.781 2 2 1 2 569.670 3 3 1 1 689.556 4 4 1 2 747.541 5 5 1 1 618.134 6 6 1 2 612.182 7 7 1 1 680.203 8 8 1 2 607.766 9 9 1 1 726.232 and I want to make a boxplot of the Y values for each Batch....

Anyone, When attempting to use batch mode to update a second host by executing the .sh file I get: [root@sspfedweb batch]# ./obsession_0000.sh Batch file ./batch/obsession_0000.rsync_flist open error: No such file or directory rsync error: syntax or usage error (code 1) at batch.c(241) Can anyone tell me whatI'm doing wrong. I...

...still comparing checksums via the net. I expect this could be very popular for the growing number of people who want to do disk-based offsite backups, which is what I needed it for. It took me longer than I hoped, but still only several hours to work this out -- it turned out to be easy enough. Batch mode did most of what I wanted; I just needed to keep --write-batch from also sending the changed blocks over the net. It was harder than it could have been; because the entire protocol goes through write_fd(), I couldn't just shut off all traffic there, but instead had to redirect unwanted tr...

Dear R user, I am trying to reproduce the results in Montgomery D.C (2001, chap 13, example 13-1). Briefly, there are three suppliers, four batches nested within suppliers and three determinations of purity (response variable) on each batch. It is a two stage nested design, where suppliers are fixed and batches are random. y_ijk=mu+tau_i+beta_j(nested in tau_i)+epsilon_ijk Here are the data, purity<-c(1,-2,-2,1, -1,-3, 0,4,...

I realize batch mode is still experimental, but I was hoping there might be a workaround for a problem I am getting. I have been trying to run some tests and I get the below error when I use the --read-batch option to. I can successfully create an initial set of batch files, then a second set based upon a few...

Hi, Out of laziness I just used "R CMD batch" instead of "R CMD BATCH". I didn't get an error so didn't think about the consequences... One consequence is (at least on Mac OS X 10.11 but probably in more generality) that R_BATCH_OPTIONS are ignored, which was kind of fatal in my case... I am thus wondering whether it ma...

Hello to everybody! I want to run R in batch mode but it doen't work (Error: syntax error) I've found this in R help: R CMD BATCH [options] infile [outfile] I have tried differents commands: (I have been working in the same directory I have "test.txt" file and "test2.txt" would be the output file) > R CMD B...

I have some batch JOBs migrate from CEBTOS 5.3 to CENTOS 5.4 server. Those batch files start on "#!/bin/csh -v". Those batch files run good under CENTOS 5.3. on CENTOS 5.4 batch jobs still run good but end of batch priocess it will show "history". Does anyone know why? Thanks. ____________...

I have written a batch file I thought would run in R (for Windows, 1.5.1), but as the documentation suggests, R is different in how it handles BATCH from S-Plus (i.e. not directly equivalent to "Splus BATCH infile outfile errfile"). If the file consists of a list of valid R commands, what's the best way of...