search for: atlas2

Hi, I know this is not a problem comming from R, but maybe you can still help me. I installed R 1.4.1 on Debian Woody, but I can't start it. I get this message: ~$ R /usr/lib/R/bin/R.bin: error while loading shared libraries: libblas.so.2: cannot open shared object file: No such file or directory Any thoughts? S?bastien Plante

Full_Name: Michael J. O'Donnell Version: 1.3.1-1 OS: Linux, Debian Woody distribution Submission from: (NULL) (64.34.17.133) I tried to install the R packages for the Debian GNU/Linux Woody distribution. I added "deb http://cran.r-project.org/bin/linux/debian woody main" to my /etc/apt/sources.list, and ran dselect with the apt-get method. I selected all of the R packages that I

Hi, I tried installing R on my system (Debian Linux 2.2.17, i386). I find that libf77blas.so is missing. Can someone tell me where and how I can find this? A search in debian.org didnt turn up anything. Anyway help will be greatly appreciated. Thanks, Anand _________________________________________________________________________ Get Your Private, Free E-mail from MSN Hotmail at

...1.3.0-3 (for GNU R), both Octave and R can be used with Atlas, the Automatically Tuned Linear Algebra Software, in order to obtain much faster linear algebra operations. To make use of Atlas, Debian users need to install the Atlas libraries for their given cpu architecture. Concretely, one of atlas2-base - Automatically Tuned Linear Algebra Software atlas2-p3 - Automatically Tuned Linear Algebra Software atlas2-p4 - Automatically Tuned Linear Algebra Software atlas2-athlon - Automatically Tuned Linear Algebra Software must be installed. Here, 'base' provides generic librar...

Hi, I've installed Wine version 20041201 on RedHat 9 and Winetools 210-jo, but when I try to execute Winetools (by typing wt2 on shell (as a user, not root), I just get all the error messages below. Any suggestions as to what I'm doing wrong, please? Best regards, Andy [andrew@Atlas2 andrew]$ wt2 bash: wt2: command not found [andrew@Atlas2 andrew]$ cd /usr/local/winetools [andrew@Atlas2 winetools]$ wt2 bash: wt2: command not found [andrew@Atlas2 winetools]$ wt ls: /home/andrew/.wine/dosdevices/: No such file or directory rm: cannot lstat `/home/andrew/.wine/dosdevices/f:':...

Hello, After reinstalling the whole OS and R as well, I tried to update.packages() and get the follwing error message: concerning the mgcv update: atlas2-base is installed and blas as well (on debian). I haven't found lf77blas, I assume it's a library or something similar associated with blas. any suggestion how to solve that, thanks Martin * Installing *source* package 'cluster' ... ** libs gcc -I/usr/lib/R/include -D__NO_MAT...

...ou only requested a single operation it is extremely likely that the package is simply not installable and a bug report against that package should be filed. The following information may help to resolve the situation: Sorry, but the following packages have unmet dependencies: r-base: Depends: atlas2 but it is not installable Depends: tk8.0 (>= 8.0.5) but it is not installable E: Sorry, broken packages Can someone tell me if this is a problem with the deb package on cran or some problem of mine? I've frequently used apt-get in the past (though not for R) and had no problems....

...ystem Information: > Debian Release: testing/unstable > Architecture: i386 > Kernel: Linux festiva.act.cmis.csiro.au 2.4.22-1-686 #4 Sun Sep 28 13:27:15 EST 2003 i686 > Locale: LANG=C, LC_CTYPE=C (ignored: LC_ALL set to C) > > Versions of packages r-base-core depends on: > ii atlas2-base [atlas2] 3.2.1ln-11 Automatically Tuned Linear Algebra > ii libbz2-1.0 1.0.2-1 A high-quality block-sorting file > ii libc6 2.3.2-8 GNU C Library: Shared libraries an > ii libg2c0 1:3.3.2-0pre4 Runtime li...

...ied installing a language learning program in Wine, but can't get it to work. Actually, it's a pretty old program, designed to run in Windows 3.1 or 95 (!), so I thought it would be OK - it seems to install OK, but won't run - the diagnostics are below - any ideas please? Andy [andrew@Atlas2 andrew]$ wine "c:\spanish_tg\setup.exe" fixme:shell:Stream_WriteLocationInfo writing empty location info err:menubuilder:ExtractFromEXEDLL LoadLibraryExA (C:\spanish_tg\spanish.ico) failed, error 193 fixme:shell:SHELL32_DllCanUnloadNow (void): stub fixme:shell:SHELL32_DllCanUnloadNow (voi...

Dear R'ers, when I e.g. install the integrate2.2-2 package under R1.1.1 (debian2.2) atlas is linked into the library: Installing package `integrate' ... libs gcc -shared -lc -shared -o /usr/lib/R/library/integrate/libs/integrate.so adapt.o adapt_callback.o bsrl.o flfm.o nxprt.o symrl.o wht.o -L/usr/local/lib -lf77blas -lcblas -latlas -lg2c -lm -L/usr/lib/gcc-lib/i386-linux/2.95.2

Dear All, Under Debian GNU/Linux La.svd (with method = "dgesdd") sometimes gives the error "Error in La.svd(data, nu = 0, nv = min(nrow, ncol), method = "dgesdd") : LAPACK routine DGESDD gave error code -12" It seems not to depend on the data per se, but on the relationship between numbers of rows and columns. For example, if the number of columns is 100,

...; > > Architecture: i386 > > > Kernel: Linux festiva.act.cmis.csiro.au 2.4.22-1-686 #4 Sun Sep 28 13:27:15 EST 2003 i686 > > > Locale: LANG=C, LC_CTYPE=C (ignored: LC_ALL set to C) > > > > > > Versions of packages r-base-core depends on: > > > ii atlas2-base [atlas2] 3.2.1ln-11 Automatically Tuned Linear Algebra > > > ii libbz2-1.0 1.0.2-1 A high-quality block-sorting file > > > ii libc6 2.3.2-8 GNU C Library: Shared libraries an > > > ii libg2c0...

...i386 > > > > Kernel: Linux festiva.act.cmis.csiro.au 2.4.22-1-686 #4 Sun Sep 28 13:27:15 EST 2003 i686 > > > > Locale: LANG=C, LC_CTYPE=C (ignored: LC_ALL set to C) > > > > > > > > Versions of packages r-base-core depends on: > > > > ii atlas2-base [atlas2] 3.2.1ln-11 Automatically Tuned Linear Algebra > > > > ii libbz2-1.0 1.0.2-1 A high-quality block-sorting file > > > > ii libc6 2.3.2-8 GNU C Library: Shared libraries an > > > > ii libg2c...

...svn rev 37675 language R version.string Version 2.3.0 alpha (2006-04-08 r37675) I'm using ATLAS with the SSE2 extensions, and get the same error with ATLAS 3.2.1 (packages atlas2-* 3.2.1ln-15 in Debian) and 3.6.0 (packages atlas3-* 3.6.0-19 in Debian). I've also tried without external BLAS (--without-blas), but the error still occurs. 43 (0) $ ./configure [...] R is now configured for i686-pc-linux-gnu Source directory: . Installation directory: /usr/...

Dirk's mail to r-devel bounced because of his peculiar return address. He asked me to forward this for him. P.S. I have tried building R with atlas2 on a Debian GNU/Linux 2.2 system but I have not yet managed to out-fox the configure script to get it to use the desired shared object library. -- Douglas Bates bates@stat.wisc.edu Statistics Department 608/262-2598 University of Wisconsin - Madison...

Hi all, We recently upgrade from CentOS 5.8 to CentOS 5.9 on kernel-xen-2.6.18-348.3.1.el5, and after booting into the new kernel, noted large amounts of these messages every second or so in the logs: Mar 30 21:38:35 atlas2 kernel: Warning Timer ISR/0: Time went backwards: delta=-1393683849 delta_cpu=22316151 shadow=225003685197135 off=129240997 processed=225005208029053 cpu_processed=225003792029053 On both the dom0 and the domUs. Some reading indicates that this _was_ a fault fixed in 2009/2010, but it seems to...

...ides only a snapshot of gcc-3.0, not the latest released version, so this may cause problems with installation under the testing distribution. I can recompile the packages if this becomes too awkward. Let me know if you need this. These packages have been linked against Camm Maguire's latest atlas2-base package for Atlas. I would recommend getting that - it is a much more recent version of Atlas. I need a volunteer to compile the packages on a Debian 2.2 (potato) system. Thomas Lumley has done that but I know he is very busy now and I don't want to impose on him. If you have a machine...

...ides only a snapshot of gcc-3.0, not the latest released version, so this may cause problems with installation under the testing distribution. I can recompile the packages if this becomes too awkward. Let me know if you need this. These packages have been linked against Camm Maguire's latest atlas2-base package for Atlas. I would recommend getting that - it is a much more recent version of Atlas. I need a volunteer to compile the packages on a Debian 2.2 (potato) system. Thomas Lumley has done that but I know he is very busy now and I don't want to impose on him. If you have a machine...

...herefore, I suspect that the SearchEngine.class code is somewhat java-1.1x specific. -- System Information Debian Release: 3.0 Architecture: i386 Kernel: Linux yod 2.4.13 #2 Wed Oct 31 15:09:05 CET 2001 i686 Locale: LANG=C, LC_CTYPE= Versions of packages r-base depends on: ii atlas2-athlon [blas2] 3.2.1-12 Automatically Tuned Linear Algebra ii atlas2-base [blas2] 3.2.1l-2 Automatically Tuned Linear Algebra ii blas1 [blas2] 1.0-9 A set of building blocks for perfo ii libc6 2.2.4-7 GNU C Library: Shar...

Hi there, I try to compare the mixed model package "lme" by Splus and R. I used the dataset "Ovary" and the following code assuming AR(1) model for the error term: lme(follicles ~ sin(2*pi*Time) + cos(2*pi*Time), data=Ovary, random = pdDiag(~sin(2*pi*Time) ) , correlation=corAR1() ) But I got different results! And then I used a simpler model: lme(follicles ~