search for: apst

R version 3.2.2. library(vegan) I was to look at community tables from my dendrograms and am trying out the vegemite command. This is the error I get: Error in vegemite(apst, apst.clusters) : Cowardly refusing to use longer than 1 char symbols: Use scale I thought the problem was that I was using the log transformed data, but I tried it on the raw (which is single digit numbers), and still no luck. Any suggestions would be appreciated. -- Ansley Silva *"...

I''m using xen-unstable, and I''ve successfully made a passthrough of an intel storage controller to an HVM domU, binding with pciback. 00:1f.2 SATA controller: Intel Corporation 6 Series/C200 Series Chipset Family SATA AHCI Controller (rev 05) I can access the array from within Windows by installing Intel Rapide Storage Drivers, and everything works as it should. I only have a

...b found [ 0.780732] hub 2-0:1.0: 6 ports detected [ 0.787628] ahci 0000:00:17.0: version 3.0 [ 0.801146] ahci 0000:00:17.0: AHCI 0001.0301 32 slots 5 ports 6 Gbps 0x3e impl SATA mode [ 0.801271] ahci 0000:00:17.0: flags: 64bit ncq sntf pm led clo only pio slum part ems deso sadm sds apst [ 0.834334] scsi host0: ahci [ 0.835080] scsi host1: ahci [ 0.835852] scsi host2: ahci [ 0.836459] scsi host3: ahci [ 0.837156] scsi host4: ahci [ 0.837750] scsi host5: ahci ... just messages about Disks, etc. following With this BUG the Servers gets unusable for me ... Kind Reg...

...CI INT B -> GSI 20 (level, low) -> IRQ 20 alloc irq_desc for 34 on node -1 alloc kstat_irqs on node -1 ahci 0000:00:1f.2: irq 34 for MSI/MSI-X ahci 0000:00:1f.2: AHCI 0001.0300 32 slots 6 ports 6 Gbps 0x3 impl SATA mode ahci 0000:00:1f.2: flags: 64bit ncq sntf pm led clo pio slum part ems apst ahci 0000:00:1f.2: setting latency timer to 64 scsi0 : ahci scsi1 : ahci scsi2 : ahci scsi3 : ahci scsi4 : ahci scsi5 : ahci ata1: SATA max UDMA/133 abar m2048 at 0xfe501000 port 0xfe501100 irq 34 ata2: SATA max UDMA/133 irq_stat 0x00400040, connection status changed irq 34 ata3: DUMMY ata4: DUMMY...

Konrad, et al, I am seeing visual corruption (almost like an interlacing problem) with i915 under Xen on some platforms using linux-3.8. See attached file for an example of the visual corruption. This particular platform is an HP Elitebook 2540p The same kernel and ramdisk, when booted as native linux does not show this corruption. dmesg is attached, as well (out.txt) - but I did not see

...CI INT B -> GSI 20 (level, low) -> IRQ 20 alloc irq_desc for 34 on node -1 alloc kstat_irqs on node -1 ahci 0000:00:1f.2: irq 34 for MSI/MSI-X ahci 0000:00:1f.2: AHCI 0001.0300 32 slots 6 ports 6 Gbps 0x3 impl SATA mode ahci 0000:00:1f.2: flags: 64bit ncq sntf pm led clo pio slum part ems apst ahci 0000:00:1f.2: setting latency timer to 64 scsi0 : ahci scsi1 : ahci scsi2 : ahci scsi3 : ahci scsi4 : ahci scsi5 : ahci ata1: SATA max UDMA/133 abar m2048 at 0xfe501000 port 0xfe501100 irq 34 ata2: SATA max UDMA/133 irq_stat 0x00400040, connection status changed irq 34 ata3: DUMMY ata4: DUMMY...

...00:1f.2: PCI INT B -> GSI 19 (level, low) -> IRQ 19 [ 1.379361] ahci 0000:00:1f.2: irq 45 for MSI/MSI-X [ 1.389835] ahci 0000:00:1f.2: AHCI 0001.0300 32 slots 6 ports 3 Gbps 0x3f impl SATA mode [ 1.390068] ahci 0000:00:1f.2: flags: 64bit ncq sntf ilck pm led clo pio slum part ems sxs apst [ 1.390300] ahci 0000:00:1f.2: setting latency timer to 64 [ 1.401646] scsi0 : ahci [ 1.402324] scsi1 : ahci [ 1.402665] scsi2 : ahci [ 1.403036] scsi3 : ahci [ 1.403369] scsi4 : ahci [ 1.403695] scsi5 : ahci [ 1.405090] ata1: SATA max UDMA/133 abar m2048 at 0xfbe06000 port...

On Thu, 2014-05-15 at 11:01 +0100, Ian Campbell wrote: > Please can you also post Xen's own dmesg (from "xl dmesg"). Please boot with loglvl=all on the hypervisor command line for this too. Ian.

....0 eth1: (PCI:33MHz:32-bit) 00:0e:0c:7f:a5:ce [ 1.755145] e1000 0000:04:00.0 eth1: Intel(R) PRO/1000 Network Connection [ 1.765895] ahci 0000:00:1f.2: AHCI 0001.0300 32 slots 6 ports 6 Gbps 0xf impl SATA mode [ 1.765900] ahci 0000:00:1f.2: flags: 64bit ncq sntf pm led clo pio slum part ems apst [ 1.790199] scsi0 : ahci [ 1.790361] scsi1 : ahci [ 1.790482] scsi2 : ahci [ 1.790580] scsi3 : ahci [ 1.790680] scsi4 : ahci [ 1.790780] scsi5 : ahci [ 1.790812] ata1: SATA max UDMA/133 abar m2048 at 0xc2540000 port 0xc2540100 irq 48 [ 1.790814] ata2: SATA max UDMA/133 abar...

https://bugs.freedesktop.org/show_bug.cgi?id=109681 Bug ID: 109681 Summary: Nvidia GT710 => nouveau + wayland + swayWM => crash when use acceleration (open Firefox) Product: Mesa Version: 18.3 Hardware: x86-64 (AMD64) OS: Linux (All) Status: NEW Severity: critical

...ci 0000:00:1f.2: irq 42 for MSI/MSI-X [ 0.833086] ahci 0000:00:1f.2: SSS flag set, parallel bus scan disabled [ 0.844683] ahci 0000:00:1f.2: AHCI 0001.0300 32 slots 6 ports 6 Gbps 0x13 impl SATA mode [ 0.844687] ahci 0000:00:1f.2: flags: 64bit ncq ilck stag pm led clo pio slum part ems sxs apst [ 0.858821] scsi0 : ahci [ 0.859207] scsi1 : ahci [ 0.859395] scsi2 : ahci [ 0.859540] scsi3 : ahci [ 0.859685] scsi4 : ahci [ 0.859834] scsi5 : ahci [ 0.859887] ata1: SATA max UDMA/133 abar m2048 at 0xf3a38000 port 0xf3a38100 irq 42 [ 0.859890] ata2: SATA max UDMA/133 abar...

...1.2 on pci0 ahci0: attempting to allocate 1 MSI vectors (1 supported) msi: routing MSI IRQ 262 to local APIC 0 vector 57 ahci0: using IRQ 262 for MSI ahci0: AHCI v1.30 with 6 6Gbps ports, Port Multiplier not supported ahci0: Caps: 64bit NCQ ALP AL CLO 6Gbps PMD SSC PSC 32cmd EM 6ports ahci0: Caps2: APST ahci0: EM Caps: ALHD XMT SMB LED ahcich0: <AHCI channel> at channel 0 on ahci0 ahcich0: Caps: HPCP ahcich1: <AHCI channel> at channel 1 on ahci0 ahcich1: Caps: HPCP ahcich2: <AHCI channel> at channel 2 on ahci0 ahcich2: Caps: HPCP ahcich3: <AHCI channel> at channel 3 on ahci...

https://bugs.freedesktop.org/show_bug.cgi?id=76818 Priority: medium Bug ID: 76818 Assignee: nouveau at lists.freedesktop.org Summary: Xorg EQ overflowing lock up QA Contact: xorg-team at lists.x.org Severity: normal Classification: Unclassified OS: All Reporter: max.snow at 4mation.com.au

...1.3 Linux agpgart interface v0.103 ahci 0000:00:1f.2: version 3.0 ahci 0000:00:1f.2: irq 41 for MSI/MSI-X ahci: SSS flag set, parallel bus scan disabled ahci 0000:00:1f.2: AHCI 0001.0300 32 slots 6 ports 6 Gbps 0x5 impl SATA mode ahci 0000:00:1f.2: flags: 64bit ncq stag pm led clo pio slum part ems apst ahci 0000:00:1f.2: setting latency timer to 64 scsi0 : ahci scsi1 : ahci scsi2 : ahci scsi3 : ahci scsi4 : ahci scsi5 : ahci ata1: SATA max UDMA/133 abar m2048 at 0xb3617000 port 0xb3617100 irq 41 ata2: DUMMY ata3: SATA max UDMA/133 abar m2048 at 0xb3617000 port 0xb3617200 irq 41 ata4: DUMMY ata5:...

...irq=21 (gsi=21) [ 3.527577] e1000e 0000:02:00.0: Interrupt Throttling Rate (ints/sec) set to dynamic conservative mode [ 3.540151] ahci 0000:00:1f.2: AHCI 0001.0300 32 slots 6 ports 6 Gbps 0xf impl SATA mode [ 3.540154] ahci 0000:00:1f.2: flags: 64bit ncq sntf pm led clo pio slum part ems apst [ 3.564418] scsi0 : ahci [ 3.564552] scsi1 : ahci [ 3.564633] scsi2 : ahci [ 3.564692] scsi3 : ahci [ 3.564739] scsi4 : ahci [ 3.564789] scsi5 : ahci [ 3.564823] ata1: SATA max UDMA/133 abar m2048 at 0xc2540000 port 0xc2540100 irq 71 [ 3.564827] ata2: SATA max UDMA/133 abar...

...ing enabled [ 0.674558] Linux agpgart interface v0.103 [ 0.675312] ahci 0000:00:17.0: version 3.0 [ 0.685583] ahci 0000:00:17.0: AHCI 0001.0301 32 slots 3 ports 6 Gbps 0xd impl SATA mode [ 0.685585] ahci 0000:00:17.0: flags: 64bit ncq sntf pm led clo only pio slum part ems deso sadm sds apst [ 0.691609] scsi host0: ahci [ 0.691956] scsi host1: ahci [ 0.692178] scsi host2: ahci [ 0.692430] scsi host3: ahci [ 0.692467] ata1: SATA max UDMA/133 abar m2048 at 0xdf42b000 port 0xdf42b100 irq 120 [ 0.692468] ata2: DUMMY [ 0.692469] ata3: SATA max UDMA/133 abar m2048 at 0x...

...0.742827] ahci 0000:00:1f.2: irq 42 for MSI/MSI-X [ 0.742878] ahci: SSS flag set, parallel bus scan disabled [ 0.757732] ahci 0000:00:1f.2: AHCI 0001.0300 32 slots 6 ports 6 Gbps 0x13 impl SATA mode [ 0.757842] ahci 0000:00:1f.2: flags: 64bit ncq ilck stag pm led clo pio slum part ems sxs apst [ 0.757952] ahci 0000:00:1f.2: setting latency timer to 64 [ 0.772415] alg: No test for __gcm-aes-aesni (__driver-gcm-aes-aesni) [ 0.776804] scsi0 : ahci [ 0.777439] scsi1 : ahci [ 0.777775] scsi2 : ahci [ 0.778285] scsi3 : ahci [ 0.778505] scsi4 : ahci [ 0.778842] scsi5 :...

...0875] loop: module loaded [ 0.570904] ahci 0000:00:1f.2: version 3.0 [ 0.570951] ahci 0000:00:1f.2: irq 43 for MSI/MSI-X [ 0.581115] ahci 0000:00:1f.2: AHCI 0001.0300 32 slots 6 ports 6 Gbps 0x3f impl SATA mode [ 0.581119] ahci 0000:00:1f.2: flags: 64bit ncq pm led clo pio slum part ems apst [ 0.581134] ahci 0000:00:1f.2: setting latency timer to 64 [ 0.591286] scsi0 : ahci [ 0.591327] scsi1 : ahci [ 0.591358] scsi2 : ahci [ 0.591388] scsi3 : ahci [ 0.591420] scsi4 : ahci [ 0.591448] scsi5 : ahci [ 0.591467] ata1: SATA max UDMA/133 abar m2048@0xf7d16000 port 0xf...

...art interface v0.103 [ 0.815951] ahci 0000:00:1f.2: version 3.0 [ 0.816020] ahci 0000:00:1f.2: irq 39 for MSI/MSI-X [ 0.826186] ahci 0000:00:1f.2: AHCI 0001.0300 32 slots 6 ports 6 Gbps 0x21 impl SATA mode [ 0.826692] ahci 0000:00:1f.2: flags: 64bit ncq sntf pm led clo pio slum part ems apst [ 0.829531] scsi host0: ahci [ 0.830146] scsi host1: ahci [ 0.830734] scsi host2: ahci [ 0.831291] scsi host3: ahci [ 0.831826] scsi host4: ahci [ 0.832359] scsi host5: ahci [ 0.832830] ata1: SATA max UDMA/133 abar m2048 at 0xfb845000 port 0xfb845100 irq 39 [ 0.833296] ata2...

..._hint:1 Trig_Mode:0 Dlvry_Mode:1 Avail:0 Vector:67 Dest:000403FF SID:802C SQ:0 SVT:1) File Systems. [ 33.894402] IOAPIC[2]: Set routing entry (10-16 -> 0x67 -> IRQ 166 Mode:1 Active:1 Dest:263167) Startin [ 33.939154] ahci 0000:00:11.4: flags: 64bit ncq led clo pio slum part ems apst g Preprocess NFS [ 33.949175] AVX2 version of gcm_enc/dec engaged. configuration.. [ 33.955538] AES CTR mode by8 optimization enabled . reprocess NFS co [ 33.968977] scsi host1: ahci nfiguration. ] Reached target [ 33.983120] ata1: SATA max UDMA/133 abar m2048 at 0x91d00000 port 0x91d0010...