search for: anovalist

In R, we currently have the functions anovalist.lm and anova.glmlist S / S-plus has anova.lmlist anova.glmlist On the other hand, the [n]lme package (library) of Doug Bates and Jose Pinheiro has an "lmList" class and an anova.lmList(.) method for that. We are considering to use anovalist.lm and anovalist.glm instead of t...

anova() on three or more objects behaves inconsistently in R. In R anovalist.lm does a sequential ANOVA using pairwise F tests, ignoring all the other objects, so the larger of the two models provides the denominator. In S anova.lmlist uses the denominator from the largest model (smallest residual df) in the set, as does anova.glmlist in both. I suggest that R's anova...

...used to generate the text. The deparse function takes a "width.cutoff" argument, that could be used in these cases, if it were possible to pass a value to it, or if its default value could be set with an option. Other methods do not use deparse, (print.summary.polr in MASS uses dput and anovalist.nls also does it differently) so such a solution would not work universally without altering these functions. Here is a toy example that illustrates the overshoot of the formula \documentclass[12pt]{article} \usepackage{geometry} \geometry{left=2in,right=2in} \begin{document} <<keep.source=...

....ts agrep AIC AIC.default AIC.logLik alias .Alias alias.formula alias.lm alist all all.equal all.equal.character all.equal.default all.equal.factor all.equal.formula all.equal.language all.equal.list all.equal.numeric all.equal.POSIXct all.names all.vars anova anova.glm anova.glmlist anova.glm.null anovalist.lm anova.lm anova.lmlist anova.lm.null anova.mlm any aov aperm append apply approx approxfun apropos Arg args array arrows as.array as.call as.character as.character.default as.character.factor as.character.octmode as.character.POSIXt ... yinch zapsmall zip.file.extract function call [objects('...

...ase")))) + || any(grep("format.default[(]", deparse(get(i, pos="package:base")))) + )collect <- c(collect, i) + } > collect [1] "add1.default" "add1.glm" "add1.lm" "all.equal.numeric" [5] "anovalist.lm" "as.matrix.data.frame" "drop1.default" "drop1.glm" [9] "drop1.lm" "format.char" "format.default" "format.pval" [13] "help.search" "hist.default" &q...

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Dear all, I'm writing a lgrind definition for R. Lgrind is a program to produce pretty program listings for inclusion in LaTeX documents. Does anybody here have any experience with lgrindefs? My definition now looks like this: R:\ :pb=^\d?\p\d<-\dfunction\(\a\):\ :bb={:be=}:cb=\d#:ce=$sb=":se=\e":lb=':le=\e':id=.:\ :zb=@:ze=@:tb=%%:te=%%:mb=%\$:me=\$%:vb=%\|:ve=\|%:\

Dear all, I'm writing a lgrind definition for R. Lgrind is a program to produce pretty program listings for inclusion in LaTeX documents. Does anybody here have any experience with lgrindefs? My definition now looks like this: R:\ :pb=^\d?\p\d<-\dfunction\(\a\):\ :bb={:be=}:cb=\d#:ce=$sb=":se=\e":lb=':le=\e':id=.:\ :zb=@:ze=@:tb=%%:te=%%:mb=%\$:me=\$%:vb=%\|:ve=\|%:\

Hi, there I'm trying to get the value of the Mean Square from the ANOVA model summary that comes from specifying the error term, and am wondering if one can actually do this ( I know it's possible when using anova(lm) objects and the like, but I'm having a tough time with it under this framework). There does appear to be some indexing in the output of this type, but perhaps not

In RW0.651 and RW0.901, I discovered some unexpected behaviour when I used as.matrix.data.frame() > matrix('"', 2, 2) [,1] [,2] [1,] "\"" "\"" [2,] "\"" "\"" > unclass(as.data.frame(matrix('"', 2, 2))) $V1 [1] "\"" "\"" $V2 [1] "\"" "\""

...to "NA", and better handling of the 0-rank case where all coefficients are missing). o codes() and codes<-() are deprecated, as almost all uses misunderstood what they actually do. o The use of multi-argument return() calls is deprecated: use a (named) list instead. o anovalist.lm (replaced in 1.2.0) is now deprecated. o - and Ops methods for POSIX[cl]t objects are removed: the POSIXt methods have been used since 1.3.0. o glm.fit.null(), lm.fit.null() and lm.wfit.null() are deprecated. o Classes "lm.null" and "glm.null" are deprecated a...

...to "NA", and better handling of the 0-rank case where all coefficients are missing). o codes() and codes<-() are deprecated, as almost all uses misunderstood what they actually do. o The use of multi-argument return() calls is deprecated: use a (named) list instead. o anovalist.lm (replaced in 1.2.0) is now deprecated. o - and Ops methods for POSIX[cl]t objects are removed: the POSIXt methods have been used since 1.3.0. o glm.fit.null(), lm.fit.null() and lm.wfit.null() are deprecated. o Classes "lm.null" and "glm.null" are deprecated a...

...ce version 2.15.1 is no longer available. o Functions traceOn() and traceOff() in package methods are now defunct. o Function CRAN.packages() is finally defunct. o Use of col2rgb(0) is defunct: use par("bg") or NA instead. o The long-defunct functions Rd_parse(), anovalist.lm(), categpry(), clearNames(), gammaCody(), glm.fit.null(), lm.fit.null(), lm.wfit.null(), manglePackageNames(), mauchley.test(), package.contents(), print.coefmat(), reshapeLong(), reshapeWide(), tkclose(), tkcmd(), tkfile.dir(), tkfile.tail(), tkopen(), tkputs(), tk...

...ce version 2.15.1 is no longer available. o Functions traceOn() and traceOff() in package methods are now defunct. o Function CRAN.packages() is finally defunct. o Use of col2rgb(0) is defunct: use par("bg") or NA instead. o The long-defunct functions Rd_parse(), anovalist.lm(), categpry(), clearNames(), gammaCody(), glm.fit.null(), lm.fit.null(), lm.wfit.null(), manglePackageNames(), mauchley.test(), package.contents(), print.coefmat(), reshapeLong(), reshapeWide(), tkclose(), tkcmd(), tkfile.dir(), tkfile.tail(), tkopen(), tkputs(), tk...

...T_Cval(), a new R_D_LExp() and improved R_DT_log() and R_DT_Clog(); this improves accuracy in several [dpq]-functions {for "extreme" arguments}. DEPRECATED & DEFUNCT o print.coefmat() is defunct, replaced by printCoefmat(). o codes() and codes<-() are defunct. o anovalist.lm (replaced in 1.2.0) is now defunct. o glm.fit.null(), lm.fit.null() and lm.wfit.null() are defunct. o print.atomic() is defunct. o The command-line arguments --nsize and --vsize are no longer recognized as synonyms for --min-nsize and --min-vsize (which replaced them in 1.2.0)....

...T_Cval(), a new R_D_LExp() and improved R_DT_log() and R_DT_Clog(); this improves accuracy in several [dpq]-functions {for "extreme" arguments}. DEPRECATED & DEFUNCT o print.coefmat() is defunct, replaced by printCoefmat(). o codes() and codes<-() are defunct. o anovalist.lm (replaced in 1.2.0) is now defunct. o glm.fit.null(), lm.fit.null() and lm.wfit.null() are defunct. o print.atomic() is defunct. o The command-line arguments --nsize and --vsize are no longer recognized as synonyms for --min-nsize and --min-vsize (which replaced them in 1.2.0)....