Displaying 20 results from an estimated 40 matches for "acml".
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2006 Oct 16
3
x86_64, acml-3.5.0-gfortran64 and lme4
I am encountering segfaults when checking the lme4 package on an
Athlon64 system if I use the acml blas. R was built as a 64-bit
application using the GCC 4.0.3 compiler suite including gfortran.
The version of acml is 3.5.0 gfortran64.
I do not encounter the segfaults when I compile R with R's built-in
BLAS. The errors occur in the first example in lme4 in a call to
lmer. It looks like t...
2006 Jul 22
1
compile R with ACML support | RHEL 4
Greetings -
I'm trying to compile R under GNU/Linux (RHEL 4) on a multi-Opteron box,
with ACML support.
First, I downloaded and installed ACML 3.5 - GNU version, although I'm
not entirely sure what the differences are - from the AMD website. The
ACML libraries were installed to /opt/acml3.5.0/
Second, I ran ./configure --with-blas='-lacml'
The configure went fine, exce...
2010 Aug 24
1
Trouble configuring R to use ACML
I am trying to get R to use the ACML BLAS, specifically the 'mp' version for
multithreading.
I have installed acml-4-4-0-gfortran-64bit
I added /opt/acml4.4.0/gfortran64_mp/lib to $LD_LIBRARY_PATH.
I ran: sudo ./configure --with-blas="-L/opt/acml4.4.0/gfortran64_mp/lib
-lacml_mp"
At the end of the configuration...
2005 Dec 14
1
Building R-devel with ACML
I'm trying to build R-devel with AMD's ACML. I downloaded version 3.0.0
64bit for gfortran (acml-3-0-0-gfortran-64bit.tgz) and copied the
libraries to /usr/local/lib. When I configure R to build against the
ACML library, how do I know if the library has been detected and will be
used?
I run 'configure' with the '--with-bla...
2006 Jul 24
1
R and ACML
While I recently received some very helpful files and email from Kevin
Hendricks for compiling with ATLAS, thought I'd first have a stab at
ACML. Having problems, which I suspect are trivial to solve:
1. machine is running RHEL 4, meaning, it uses gcc 3.4.5 out of the box,
and g77. In my experience, over-riding RHEL's choice, and manually
upgrading to gcc 4.x.x (and, as a consequence gfortran) will cause
problems in other areas (but...
2014 Feb 25
1
acml blas+lapac in R
dear experts
I'd like to ask you, probably on behalf all of us who try to
use AMD's ACML for performance optimisation a question.
There seem to be problem when these two, R and ACML are
coupled,
described here:
http://devgurus.amd.com/message/1255852#1255852
I'd like to ask, while not being a programmer/developer, how
incorrect and dangerous this might be?
maybe such a setup mu...
2009 Jun 26
1
problems compiling for RHEL 5.3 x86_64
...to move to a distro with
longer 'term-of-life' than the release schedule for Fedora currently
allows. The machine is a multi-Opteron box, so both 32- and 64-bit apps
natively supported. Since I do a lot of 'linear algebra'-heavy things
with R, I had compiled R 2.9.0 against the ACML blas. ACML contains
lapack, so I killed two birds with one stone. Generally, I would do a
configure with
./configure --with-tcltk --with-blas="-L/opt/acml4.3.0/gfortran64/lib
-lacml"
Worked perfectly. Led to 10-20x speedup in certain calculations.
Things haven't been so good si...
2005 Sep 06
1
Build R with AMD pgi compiled ACML library
Hi,
Has anyone had any luck in using portland group compiler to build
R(-devel) with AMD's pgi compiled ACML library? I've downloaded the
packages and set LD_LIBRARY_PATH, and run configuration script as follow:
% ./configure --prefix=/usr/local/R.pgcc --with-blas='-lacml'
However, it failed to pick up double complex BLAS,
checking for sgemm_ in -lacml... yes
checking whether double comple...
2005 Dec 01
0
tuned BLAS
I've been updating the information on tuned BLAS for R-admin in R-patched
and R-devel. We have
ATLAS (widely available, including for Windows)
MKL (licensed on ix86 and x86_64 Linux and Windows)
ACML (by AMD, but for all ix86 and x86_64 chips, Linux and Windows.
Now available for gfortran.)
Goto (academic use only, only some chips, only Linux)
MKL and ACML provide full LAPACK, the other two some optimized LAPACK
routines. (We have an MKL licence with our icc/ifort licences but it h...
2009 Jun 25
1
check stats fail | part III
For grins, tried rebuilding R 2.9.0 without using ACML 4.3.0. Config
goes fine, make runs without any errors.
make check - and - ta-dah! - no errors for stats. Everything seems to
check out just fine.
So, it seems as if R 2.9.0, ACML 4.3.0, and perhaps one/more things
under CentOS don't play nice.
Will trying unloading 4.3.0, installing 4.2.0...
2008 Jun 13
2
compiling 2.7.0 GNU/Linux | BLAS & Lapack query
Greetings -
For a host of reasons I chose (was forced) to upgrade my multi-Opteron box
from Fedora 7 -> Fedora 8. In the process, I also updated the ACML I had
installed from 4.0.0 to 4.1.0.
While I get no errors (that I can find) in the config -> make -> make
install sequence, I'm pretty sure (based on some benchmarks) that I'm not
getting BLAS and/or Lapack to compile in. So, either something has changed
from 2.6.2 -> 2.7.0, or s...
2009 Jun 26
1
can't use ATLAS or ACML | 2.9.0
So, tried again from scratch. Again, CentOS 5.3, which is essentially
RHEL 5.3.
./configure --with-blas="-L/opt/acml4.3.0/gfortran64/lib -lacml"
In config.log, get things like
configure:37199: checking for dgemm_ in -L/opt/acml4.3.0/gfortran64/lib
-lacml
configure:37230: gcc -std=gnu99 -o conftest -g -O2
-I/usr/local/include -L/usr/local/lib64 conftest.c
-L/opt/acml4.3.0/gfortran64/lib -lacml -$
conf...
2009 Jun 26
0
proper link to ACML blas | compiling 2.9.0
Normally, I do the following to configure R for compilation on my
Opteron box with ACML installed:
./configure --with-tcltk --with-blas="-L/opt/acml4.3.0/gfortran64/lib
-lacml"
However, when I do so, and look at Makeconf, I see
BLAS_LIBS = -lblas
I thought I would see
BLAS_LIBS = -L/opt/acml4.3.0/gfortran64/lib -lacml
Why isn't Makeconf picking up the right BLAS_L...
2007 Aug 24
2
config error during 2.5.1 compile
Have been running 2.5.1 on my multi-pro Opteron box running Fedora Core
5 with no problems. Had compiled previously with no problems. However,
for a variety of reasons (mostly due to ACML upgrade), I tried a
recompile using the following sequence of commands (note I'm compiling
in ACML support for blas):
LD_LIBRARY_PATH=/opt/acml3.6.1/gfortran64/lib
export LD_LIBRARY_PATH
./configure --with-lapack
--with-blas="-L/opt/acml3.6.0/gfortran64/lib -lacml"
This is ex...
2004 Mar 25
1
yet another fast BLAS (from AMD this time)
Dear R-devel,
Has anyone played with this?
http://www.amd.com/us-en/Processors/DevelopWithAMD/0,,30_2252_2282,00.html
<http://www.amd.com/us-en/Processors/DevelopWithAMD/0,,30_2252_2282,00.html>
.
I'll probably give it a shot...
Best,
Andy
Andy Liaw, PhD
Biometrics Research PO Box 2000, RY33-300
Merck Research Labs Rahway, NJ 07065
mailto:andy_liaw@merck.com
2010 Aug 25
1
Trying to configure R to use acml_mp
Hi, I'm following up to a post I made to r-help here:
http://r.789695.n4.nabble.com/Trouble-configuring-R-to-use-ACML-tt2337193.html#a2337193
I have verified that LD_LIBRARY_PATH is set... I set it in /etc/bash.bashrc
(is that ok?) and it shows up when I echo $LD_LIBRARY_PATH I also tried
adding the paths to the ld.so cache as Prof Ripley had suggested. I get the
same results when running configure.
So after th...
2006 Jul 23
1
compiling R | multi-Opteron | BLAS source
...m
like this. So, I dig a bit deeper. Most of the jobs we want to run could
benefit from BLAS support (lots of array manipulations and other bits of
linear algebra), and a few other compilation optimizations - and here is
where I seek advice.
1) Looks like there are 3-4 flavours: LAPACK, ATLAS, ACML
(AMD-chips...), and Goto. In reading what I can find, it seems that
there are reasons not to use ACML (single-thread) despite the AMD chips,
reasons to avoid ATLAS (some hassles compiling on RHEL 4 boxes), reasons
to avoid LAPACK (ibid), but apparently no problems with Goto BLAS.
Is that a rea...
2010 Aug 06
0
Problems using external BLAS
I have problems building R 2.11.1 with an external BLAS. I've tried
several with several libraries:
# ACML:
export LD_LIBRARY_PATH=/site/VERSIONS/acml-3.6.0/gfortran64_int64/lib
BLAS=--with-blas="-L/site/VERSIONS/acml-3.6.0/gfortran64_int64/lib -lacml"
LAPACK=--with-lapack
# MKL 11:
BLAS=--with-blas="-L/site/VERSIONS/intel-11.1/mkl/lib/em64t -lmkl_gf_lp64 -lmkl_sequential -lmkl_lapack -l...
2006 Sep 28
1
unable to load lapack.so
Hi,
I'm having problems using ACML with R. I made two changes in
config.site by setting
LDFLAGS="-L/opt/acml3.1.0/gnu64/lib"
BLAS_LIBS="-lacml"
./config and make go through but when I try to use the lm() function,
I get the error message
Error in chol2inv(Qr$qr[p1, p1, drop = FALSE]) :
lapack routines c...
2018 Jan 04
2
Fixed BLAS tests for external BLAS library
...hoped
others would be able to benefit from). Ah well.
cheers,
Simon
On 5 January 2018 at 00:07, Tomas Kalibera <tomas.kalibera at gmail.com> wrote:
> Hi Simon,
>
> we'd need more information to consider this - particularly which
> expression gives an imprecise result with ACML and what are the computed
> values, differences. It is not common for optimized BLAS implementations to
> fail reg-BLAS.R tests, but it is common for them to report numerical
> differences in tests of various recommended packages where more complicated
> computations are done (e.g. nlme...