search for: 4sale

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2001 Oct 23
1
status of US mirror
...that ilk, indicating that some "URL scavenger" has flagged it as expired. Has something happened, or is it just wishful thinking on some scavenger's part that the URL is no longer pointing to the US CRAN mirror? Try this link: http://search.domaincollection.com/cgi-bin/form.pl?form=4sale.html&domain=us.r-project.org -- znmeb@aracnet.com (M. Edward Borasky) http://www.aracnet.com/~znmeb Relax! Run Your Own Brain with Neuro-Semantics! http://www.aracnet.com/~znmeb/Flyer.htm What phrase will you *never* hear Miss Piggy use? "You can't make a silk purse out of a sow's...
2012 Apr 11
0
phangorn and calculation of a rate matrix
...m trying to calculate a ratematrix for a RNA aligment (U instead of T) in order to use it as a ratematrix in Profidst (a phylogenetic program which takes into account both the primary sequence and the secondary structure of the RNA, in my case rRNA). The sequence-structure aligment has been made in 4SALE (a java app) and saved as one-letter encoded (using a 12 letters alphabet, "a","c","d","e","g","h","i","k","l","n","q","r" instead of the conventional nucleotide codes). My intent...