search for: 20tcggac

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2009 Jan 19
1
Deleting columns where the frequency of values are too disparate
...e individuals can have either C or G only; at Locus3 the individuals can have either T or G only. IDLocus1Locus2Locus3Locus4Locus5Locus6 1AGTAAC 2AGGACC 3ACGGCC 4ACGGCC 5AGGGAC 6TGGGCC 7TCGGCC 8TCGGAC 9TGGGCC 10TCGGCC 11AGGGAC 12ACGGCC 13AGGGCC 14AGGGAC 15ACGGCC 16TCGGCC 17TGGGAC 18TGGGCC 19TGGGCC 20TCGGAC I want to delete any columns from the dataset where the rarer of the two alleles has a frequency of ten percent or less. In other words, I would like to delete Locus3, Locus4, and Locus6 in this data matrix, because the frequency of the rare allele is not greater than ten percent (and conversely,...