search for: 10tcggcc

Displaying 1 result from an estimated 1 matches for "10tcggcc".

2009 Jan 19
1
Deleting columns where the frequency of values are too disparate
.... For example, at Locus1 individuals have have either the A or T allele only; at Locus2 the individuals can have either C or G only; at Locus3 the individuals can have either T or G only. IDLocus1Locus2Locus3Locus4Locus5Locus6 1AGTAAC 2AGGACC 3ACGGCC 4ACGGCC 5AGGGAC 6TGGGCC 7TCGGCC 8TCGGAC 9TGGGCC 10TCGGCC 11AGGGAC 12ACGGCC 13AGGGCC 14AGGGAC 15ACGGCC 16TCGGCC 17TGGGAC 18TGGGCC 19TGGGCC 20TCGGAC I want to delete any columns from the dataset where the rarer of the two alleles has a frequency of ten percent or less. In other words, I would like to delete Locus3, Locus4, and Locus6 in this data matrix,...