search for: 1sd

...s to trimm reaction time data. I want to create a plot that shows the value of F test for every trimming method. So the data frame has its trim factor (who has those labels "mean","2500","2000","1500","1000","log","inverse","1SD","2SD") and the numerical variable of the data frame has the F values for each one of those trimming method. When I ask R to plot it, it doesn''t keep the order of the trimm verctor correctly and the plot confuses the order so the most left one will be 1500 and then 1SD etc....

...l, and level 2 is the individual. I would like to plot the mean group-level trajectories at plus and minus 1 SD from the mean of the main effects composing the interaction term. Thus, the plot should have 4 lines (mean trajectories) representing all combinations of the two predictors (where LO = -1sd from its mean, and HI = +1sd from its mean): -LO predictor, LO moderator -LO predictor, HI moderator -HI predictor, LO moderator -HI predictor, HI moderator They are growth curves, so the plot should have 'time' on the x-axis and 'outcome' on the y-axis. Here's a sample model:...

...rid.rect() pushViewport(viewport(width=0.3,height=0.9,angle=0,name="vp2")) grid.rect() upViewport() pushViewport(viewport(width=0.3,height=0.9,angle=10,name="vp3")) grid.rect() Dr. Rafael Najmanovich European Bioinformatics Institute Wellcome Trust Genome Campus Cambridge CB10 1SD United Kingdom rafael.najmanovich at ebi.ac.uk - www.ebi.ac.uk/~rafi +44-1223-492599 (voice) +44-7786-968257(mobile) +44-1223-494468 (fax)

...o top (or left to right), I would like to be able to plot it in a way such that if would display 10-1 bottom to top or left to right. Any idea how to achieve this? Thanks in advance, r. Dr. Rafael Najmanovich European Bioinformatics Institute Wellcome Trust Genome Campus Cambridge CB10 1SD United Kingdom rafael.najmanovich at ebi.ac.uk - www.ebi.ac.uk/~rafi +44-1223-492599 (voice) +44-7786-968257(mobile) +44-1223-494468 (fax)

...bove: confidencebound <- quantile(pp, 0.05, na.rm = TRUE) plot(x, y) contour(den, levels = confidencebound, col = "red", add = TRUE) My problems: 1.) setting probs=0.6827 is somehow a dirty trick which I can only use by simply knowing that this is the percentage of values inside +-1sd when a distribution is normal. Is there a way doing this with "native" sd function? sd(den.z) is not correct, as den.z is in contrast to x and y not normal any more. So ecdf(den.z)(sd(den.z)) results in a percentile of 0.5644 in this example instead of the desired 0.6827. 2.) I would lik...

...E=C;LC_MEASUREMENT=en_GB.UTF-8;LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] inline_0.3.3 loaded via a namespace (and not attached): [1] rcompgen_0.1-17 -- Dr Oleg Sklyar * EBI-EMBL, Cambridge CB10 1SD, UK * +44-1223-494466

The XML package relies on libxml2.dll (e.g., bundled with the CRAN binary) installed in library/XML/libs. Unfortunately, c:/WINDOWS/system32/libxml2.dll will be found and loaded before this. Is there any programatic solution? Thanks, Martin -- Martin Morgan Computational Biology / Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N. PO Box 19024 Seattle, WA 98109 Location: Arnold

...BImage_2.4.0.tar.gz' 2) have the tex settings been changed from 2.6.0 into 2.7.0 as changes to vignette have not been significant and the compilation goes through fine with 2.6.0. Or I am missing something and doing something wrong? Best, Oleg -- Dr Oleg Sklyar * EBI-EMBL, Cambridge CB10 1SD, UK * +44-1223-494466

...h pairs of \section{Usage}{\preformatted{ }} \section{Arguments}{ } and putting all aliases marked above with * into internals, which is definitely not the best way of going around documentation and code/documentation mismatches. Best regards, Oleg -- Dr. Oleg Sklyar * EBI-EMBL, Cambridge CB10 1SD, UK * +44-1223-464466

...t; class(2*a) [1] "Image" attr(,"package") [1] "EBImage" Unfortunately, I do not have R versions installed between revisions 42199 and 42284, so I cannot narrow down to the particular revision. Thanks in advance, Oleg -- Dr. Oleg Sklyar * EBI-EMBL, Cambridge CB10 1SD, UK * +441223493366

...return result; } This function always has something to return and it works, but not really elegantly and returning wrong data when fails. Thanks in advance for any comments. Regards Oleg -- Dr Oleg Sklyar European Bioinformatics Institute Wellcome Trust Genome Campus Hinxton, Cambridge, CB10 1SD England phone/fax +44(0)1223 49 4478/4468 e-mail osklyar@ebi.ac.uk

...9;R CMD BATCH myScript --args myDataFile' then R understands --args as an output file and generates a file with that name. Does anyone has a solution for the problem? Best regards Oleg -- Dr Oleg Sklyar European Bioinformatics Institute Wellcome Trust Genome Campus Hinxton, Cambridge, CB10 1SD England phone/fax +44(0)1223 49 4478/4468 e-mail osklyar at ebi.ac.uk

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hello, how can I do to drop decimal after the comma please for example for tthis line > print(P) [1] 62.000000 1.000000 7.661290 5.200000 17.100000 2.318801 how canI do to keep only 62 1 7.66 5.2 17.1 2.32 thanks __________________________________________________ ble contre les messages non sollicités [[alternative HTML version deleted]]

...hat can be done to display effects of the terms in a "combined" way, such that the contribution of both them on their own and as part of an interaction term is taken into account. Many thanks Mikhail -- Mikhail Spivakov, PhD European Bioinformatics Institute Hinxton Cambridgeshire CB10 1SD UK spivakov at ebi.ac.uk -- View this message in context: http://www.nabble.com/allEffects%28%29-with-lm-tp23837461p23837461.html Sent from the R help mailing list archive at Nabble.com.

...03193329 -0.03025987 0.01552101 -0.02808728 [4,] 0.41733259 0.86385119 0.72718191 0.10995336 -0.03082935 0.02770219 0.08069126 Many thanks Mikhail -- Mikhail Spivakov PhD Postdoctoral Fellow European Bioinformatics Institute European Molecular Biology Laboratory Hinxton Cambridgeshire CB10 1SD UK tel +44 1223 492 260 fax +44 1223 494 468 spivakov ebi ac uk -- View this message in context: http://www.nabble.com/fastICA-tp18506527p18506527.html Sent from the R help mailing list archive at Nabble.com.

...ne argument in '...', say '1:10', then length(...) would return 10 and one could access elements by ...[[i]], but all this fails if there are two arguments or more). Thanks Oleg -- Dr Oleg Sklyar European Bioinformatics Institute Wellcome Trust Genome Campus Hinxton, Cambridge CB10 1SD United Kingdom tel +44 1223 492537 fax +44 1223 494468 email osklyar@ebi.ac.uk [[alternative HTML version deleted]]

...coding SEXP element = VECTOR_ELT(result, i); // writing some values to the element // converting element into a matrix setAttrib(element, R_DimSymbol, imgSize); Thanks in advance for help Oleg Dr Oleg Sklyar European Bioinformatics Institute Wellcome Trust Genome Campus Hinxton, Cambridge, CB10 1SD England phone/fax +44(0)1223 49 4478/4468 e-mail osklyar@ebi.ac.uk

First, thanks to those of you who responded to my previous post about my code that was taking longer and longer to process. After following your suggestions, and I now thinking that the problem was some calls to Rf_duplicate in my C code. So I'm hoping I could get some clarification on what Rf_duplicate actually does. What is the real difference between PROTECT(y=x); and PROTECT (y =

...ed for compilation allowing for the use of the correct R version when several are installed The update has been submitted to CRAN and should appear shortly. Meanwhile, the package is available from http://www.ebi.ac.uk/~osklyar/inline Best, Oleg -- Dr Oleg Sklyar * EBI/EMBL, Cambridge CB10 1SD, England * +44-1223-494466