Displaying 10 results from an estimated 10 matches for "1053_at".
2008 Jun 16
2
Creating a Hash from Data.Frame
Hi,
I have the following data frame:
> print(mydatframe)
__DATAFRAME__
V1 V2 V3
1 1007_s_at DDR1 discoidin domain receptor tyrosine kinase 1
2 1053_at RFC2 replication factor C (activator 1) 2, 40kDa
3 117_at HSPA6 heat shock 70kDa protein 6 (HSP70B')
__END__
Is there a way to create a hash with
V2 as Key and V3 as its value?
- Gundala Viswanath
Jakarta - Indonesia
2010 Apr 29
1
merged files
...4 16 +
79636596 79636655 10 A_23_P100141 0 0 UNKL 64718 12 16 - 1355346 1355287
*merged.txt (Should look like this)*
GeneSymbol GeneID Exons Chrome AffyMatrixProbeID AffyStart AffyEnd
AgilentProbeID AgilentStart AgilentEnd DDR1 780 21 6 A_24_P123601
30975848 30975907 RFC2 5982 10 7 1053_at:120:925,
1053_at:504:41,
1053_at:522:871,
1053_at:828:1025,
203696_s_at:291:651 73287845,
73287869,
73287863,
73287881,
73287850 73287821,
73287845,
73287839,
73287857,
73287826 A_23_P93823 73287861 73287802 RFC2 5982 11 7 HSPA6 3310
1 1 A_23_P114903 159762782 159762841 PAX8 7849...
2011 Oct 26
3
FOR loop with statistical analysis for microarray data
...i use the "affy" package to obtain the intensities of the probes, i
have two CTRs and two treated.
HG.U133A.Experiment1.CEL HG.U133A.Experiment2.CEL
HG.U133A_Control1.CEL HG.U133A_Control2.CEL
1007_s_at 2156.23115 467.75615
364.60615 362.11865
1053_at 88.76368 93.58436
438.49365 357.75615
117_at 144.00743 101.26120
95.11117 107.01623
121_at 551.36865 639.45615
456.66865 435.95615
1255_g_at 65...
2008 Jun 16
1
Separator with " | " for read.table
Hi,
I have the following data file to be parsed and captured as a data frame:
__DATA__
#GDS_ID GENE_NAME GENE_DESCRIPTION GENE_FUNCTION
1007_s_at | DDR1 | discoidin domain receptor tyrosine kinase 1 | protein-coding
1053_at | RFC2 | replication factor C (activator 1) 2, 40kDa | protein-coding
117_at | HSPA6 | heat shock 70kDa protein 6 (HSP70B') | protein-coding
__END__
In particular it is separated by " | " , namely - space, bar, space.
However I tried this without avail:
geneinfo <- read.table(&q...
2010 May 03
1
how to name the column after converting a vector to a data frame
hell all:
I have a vector as follows:
> head(res)
1007_s_at.value 1053_at.value 117_at.value 121_at.value 1255_g_at.value
0.225801033 0.009747404 0.709517954 0.008825740 0.496859178
1294_at.value
0.005091231
after I convert the res into a data frame I got the following:
resx<- data.frame(res)
> head(resx)...
2010 Apr 29
0
merge on criteria
...4 16 +
79636596 79636655 10 A_23_P100141 0 0 UNKL 64718 12 16 - 1355346 1355287
*merged.txt (Should look like this)*
GeneSymbol GeneID Exons Chrome AffyMatrixProbeID AffyStart AffyEnd
AgilentProbeID AgilentStart AgilentEnd DDR1 780 21 6 A_24_P123601
30975848 30975907 RFC2 5982 10 7 1053_at:120:925,
1053_at:504:41,
1053_at:522:871,
1053_at:828:1025,
203696_s_at:291:651 73287845,
73287869,
73287863,
73287881,
73287850 73287821,
73287845,
73287839,
73287857,
73287826 A_23_P93823 73287861 73287802 RFC2 5982 11 7 HSPA6 3310
1 1 A_23_P114903 159762782 159762841 PAX8 7849...
2008 Jun 24
1
Binding result of a function to a data frame
...ng function:
> kurtosis <-function(x) (mean((x-mean(x))^4))/(sd(x)^4) #x is a vector
and data
> print(mydata)
V1 V2 V3 V4 V5
1 1007_s_at DDR1 2865.1 2901.3 1978.3
2 1053_at RFC2 103.6 81.6 108.0
3 117_at HSPA6 222.0 222.5 306.2
4 121_at PAX8 2146.3 2457.2 1901.9
5 1255_g_at GUCA1A 226.5 321.2 109.2
6 1294_at...
2011 Oct 24
2
C function is wrong under Windows 7
Dear mailing list,
I have a C function that gives me a wrong result when I run it under Windows
7.
This is the code under Linux (RHEL5):
> library(phenoTest)
> data(epheno)
> sign <- sample(featureNames(epheno))[1:20]
> score <- getFc(epheno)[,1]
> head(score)
1007_s_at 1053_at 117_at 121_at 1255_g_at 1294_at
-1.183019 1.113544 1.186186 -1.034779 -1.044456 -1.023471
> s <- which(names(score) %in% sign)
> es.c <- .Call('getEs',score,s,PACKAGE='phenoTest')
> head(es.c)
[1] -0.001020408 -0.002040816 -0.003061224 -0.004081633 -0.005102...
2008 Mar 08
1
Errors in in my code
...") : unable to open connection
In addition: Warning messages:
1: In file(file, "r") : only first element of 'description' argument used
2: In file(file, "r") :
cannot open file
'C:/PROGRA~1/R/R-26~1.2/library/annotationTools/data/c("1007_s_at",
"1053_at", "117_at", "121_at", "1255_g_at", "1294_at", "1316_at", "1320_at",
"1405_i_at", "1431_at", "1438_at", "1487_at", "1494_f_at", "1552256_a_at",
"1552257_a_at", "...
2005 Jun 09
1
Help with SOM membership
...en
>str(allt.som)
List of 16
$ data : num [1:8, 1:22277] 1167 1282 1561 1398 1581 ...
..- attr(*, "dimnames")=List of 2
.. ..$ : chr [1:8] "m577con" "m577exp" "m578con" "m578exp" ...
.. ..$ : chr [1:22277] "1007_s_at" "1053_at" "117_at" "121_at" ...
$ code : matrix [1:25, 1:22277] 1050 1222 1411 1504 1722 ...
..- attr(*, "class")= chr "matrix"
$ visual :`data.frame': 8 obs. of 3 variables:
..$ x : num [1:8] 0 1 3 2 3 4 2 1
..$ y : num [1:8] 1 2 0...