Displaying 12 results from an estimated 12 matches for "0.0639".
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0.0039
2012 Sep 19
2
Help reproducing a contour plot
Hi All,
I am trying to reproduce this using R instead.
[image: Full-size image (38 K)]
I tried using the following code
*SChla <- read.csv("SM_Chla_data.csv")*
*Atlantis <- SChla[16:66,]*
*head(Atlantis)*
*
*
Seamount Station Depth Pico Nano Micro Total_Ch dbar Latitude
Longitud
16 Atlantis 1217 Surface 0.0639 0.1560 0.0398 0.2597 2.082 -32.71450
57.29733
2020 Oct 08
2
2 D density plot interpretation and manipulating the data
Hello,
I have a data frame like this:
> head(SNP)
mean var sd
FQC.10090295 0.0327 0.002678 0.0517
FQC.10119363 0.0220 0.000978 0.0313
FQC.10132112 0.0275 0.002088 0.0457
FQC.10201128 0.0169 0.000289 0.0170
FQC.10208432 0.0443 0.004081 0.0639
FQC.10218466 0.0116 0.000131 0.0115
...
and I am creating plot like this:
s <- ggplot(SNP, mapping = aes(x = mean, y = var))
2008 Jun 17
2
R error using Survr function with gcmrec
Would someone be able to help with this question? I'm using the
Gcmrec, Survrec, and Design packages to do a power analysis on
simulated data. I'm receiving an error after using the Survr function
that all data must have a censoring time even after using the gcmrec
function: newdata<-addCenTime(olddata). My program is below. I'd
greatly appreciate any help!
2009 Jan 23
1
forecasting error?
Hello everybody!
I have an ARIMA model for a time series. This model was obtained through an
auto.arima function. The resulting model is a ARIMA(2,1,4)(2,0,1)[12] with
drift (my time series has monthly data). Then I perform a 12-step ahead
forecast to the cited model... so far so good... but when I look the plot of
my forecast I see that the result is really far from the behavior of my time
2020 Oct 09
2
2 D density plot interpretation and manipulating the data
I recommend that you consult with a local statistical expert. Much of what
you say (outliers?!?) seems to make little sense, and your statistical
knowledge seems minimal. Perhaps more to the point, none of your questions
can be properly answered without subject matter context, which this list is
not designed to provide. That's why I believe you need local expertise.
Bert Gunter
"The
2020 Oct 09
0
2 D density plot interpretation and manipulating the data
Hi Abby,
thank you for getting back to me and for this useful information.
I'm trying to detect the outliers in my distribution based of mean and
variance. Can I see that from the plot I provided? Would outliers be
outside of ellipses? If so how do I extract those from my data frame,
based on which parameter?
So I am trying to connect outliers based on what the plot is showing:
s <-
2020 Oct 09
2
2 D density plot interpretation and manipulating the data
> My understanding is that this represents bivariate normal
> approximation of the data which uses the kernel density function to
> test for inclusion within a level set. (please correct me)
You can fit a bivariate normal distribution by computing five parameters.
Two means, two standard deviations (or two variances) and one
correlation (or covariance) coefficient.
The bivariate normal
2020 Oct 09
0
2 D density plot interpretation and manipulating the data
Hi Bert,
Another confrontational response from you...
You might have noticed that I use the word "outlier" carefully in this
post and only in relation to the plotted ellipses. I do not know the
underlying algorithm of geom_density_2d() and therefore I am having an
issue of how to interpret the plot. I was hoping someone here knows
that and can help me.
Ana
On Fri, Oct 9, 2020 at
2020 Oct 09
3
2 D density plot interpretation and manipulating the data
You could assign a density value to each point.
Maybe you've done that already...?
Then trim the lowest n (number of) data points
Or trim the lowest p (proportion of) data points.
e.g.
Remove the data points with the 20 lowest density values.
Or remove the data points with the lowest 5% of density values.
I'll let you decide whether that is a good idea or a bad idea.
And if it's a
2020 Oct 09
0
2 D density plot interpretation and manipulating the data
My understanding is that this represents bivariate normal
approximation of the data which uses the kernel density function to
test for inclusion within a level set. (please correct me)
In order to exclude the outlier to these ellipses/contours is it
advisable to do something like this:
SNP$density <- get_density(SNP$mean, SNP$var)
> summary(SNP$density)
Min. 1st Qu. Median Mean 3rd
2005 Mar 14
0
Parameters of Weibull regression
Dear list, dear Frank,
I try to fit a Weibull survival regression model with package Design:
sclear <- psm(sobj~V1+V2,dist="weibull")
sobj is a one-dimensional survival object (no event indicators), V1 and V2
are factors.
I get the following result:
Parametric Survival Model: Weibull Distribution
psm(formula = sobj ~ V1 + V2, dist = "weibull")
Obs Events
2020 Oct 09
0
2 D density plot interpretation and manipulating the data
Hi Abby,
Thanks for getting back to me, yes I believe I did that by doing this:
SNP$density <- get_density(SNP$mean, SNP$var)
> summary(SNP$density)
Min. 1st Qu. Median Mean 3rd Qu. Max.
0 383 696 738 1170 1789
where get_density() is function from here:
https://slowkow.com/notes/ggplot2-color-by-density/
and keep only entries with density > 400