Dear R users I have compiled R from source in local user account (at non default location). R seems to be working fine but issuing plot() command opens a window (supposedly graph, but nothing is visible) and then R terminal also freezes. Any suggestions? Following is the session info output.> sessionInfo()R version 3.2.3 (2015-12-10) Platform: x86_64-pc-linux-gnu (64-bit) Running under: CentOS release 6.7 (Final) locale: [1] LC_CTYPE=en_US LC_NUMERIC=C LC_TIME=en_US [4] LC_COLLATE=en_US LC_MONETARY=en_US LC_MESSAGES=en_US [7] LC_PAPER=en_US LC_NAME=C LC_ADDRESS=C [10] LC_TELEPHONE=C LC_MEASUREMENT=en_US LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base Thank you Best [[alternative HTML version deleted]]
We have had reports of the X11 device freezing. See the R bug repository: https://bugs.r-project.org/bugzilla3/show_bug.cgi?id=16497 The fix will be included in the next major release of R. Tom's EPEL RPM already contains a fix so you should perhaps try that. Martyn On Wed, 2016-02-17 at 11:24 +0900, ashutosh srivastava wrote:> Dear R users > > I have compiled R from source in local user account (at non default > location). R seems to be working fine but issuing plot() command opens a > window (supposedly graph, but nothing is visible) and then R terminal also > freezes. Any suggestions? > Following is the session info output. > > > sessionInfo() > R version 3.2.3 (2015-12-10) > Platform: x86_64-pc-linux-gnu (64-bit) > Running under: CentOS release 6.7 (Final) > > locale: > [1] LC_CTYPE=en_US LC_NUMERIC=C LC_TIME=en_US > [4] LC_COLLATE=en_US LC_MONETARY=en_US LC_MESSAGES=en_US > [7] LC_PAPER=en_US LC_NAME=C LC_ADDRESS=C > [10] LC_TELEPHONE=C LC_MEASUREMENT=en_US LC_IDENTIFICATION=C > > attached base packages: > [1] stats graphics grDevices utils datasets methods base > > > Thank you > > Best > > [[alternative HTML version deleted]] > > _______________________________________________ > R-SIG-Fedora mailing list > R-SIG-Fedora at r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-fedora----------------------------------------------------------------------- This message and its attachments are strictly confidenti...{{dropped:8}}
On Wed, 2016-02-17 at 11:24 +0900, ashutosh srivastava wrote:> > I have compiled R from source in local user account (at non default > > location). R seems to be working fine but issuing plot() command opens a > > window (supposedly graph, but nothing is visible) and then R terminal also > > freezes. Any suggestions?We found an older version of x11 and this worked for us: yum downgrade xorg-x11-server-Xorg-1.15.0-36.el6.x86_64 xorg-x11-server-Xorg-1.15.0-26.el6_6.x86_64.rpm Steve -- Steven J. Backus Computer Systems Manager University of Utah E-Mail: steven.backus at utah.edu Genetic Epidemiology Alternate: backus at math.utah.edu 391 Chipeta Way -- Suite D Office: 801.587.9308 Salt Lake City, UT 84108-1266 http://www.math.utah.edu/~backus