On Tue, 9 Oct 2018 at 12:25, Ernes Cereku <ernesicereku at gmail.com>
wrote:>
> Hi,
>
> Every package I try to install in R i get the same error "had non
zero-exit> status".
>
> I use Ubuntu 18.04.1 LTS
>
> how can i fix this? Thank you
You probably have packages that were built using R-3.4 (e.g., the distro
supplied
version).
It would be helpful to mention how you installed R-3.5 and whether you
prefer to
use binary packages or to install from source.,
You might find Installation of R-3.5 on Ubuntu 18.04 LTS
<https://www.r-bloggers.com/installation-of-r-3-5-on-ubuntu-18-04-lts-and-tips-for-spatial-packages/>
helpful.
>
> This shows up when I try install.packages("Rcmdr", dep=T)
>
> Error : package ?htmltools? was installed by an R version with different
> internals; it needs to be reinstalled for use with this R version
> ERROR: lazy loading failed for package ?rmarkdown?
> * removing ?/home/ernes/R/x86_64-pc-linux-gnu-library/3.5/rmarkdown?
> ERROR: dependency ?shiny? is not available for package ?miniUI?
> * removing ?/home/ernes/R/x86_64-pc-linux-gnu-library/3.5/miniUI?
> ERROR: dependency ?shiny? is not available for package ?crosstalk?
> * removing ?/home/ernes/R/x86_64-pc-linux-gnu-library/3.5/crosstalk?
> ERROR: dependency ?arm? is not available for package ?mi?
> * removing ?/home/ernes/R/x86_64-pc-linux-gnu-library/3.5/mi?
> ERROR: dependency ?rio? is not available for package ?car?
> * removing ?/home/ernes/R/x86_64-pc-linux-gnu-library/3.5/car?
> ERROR: dependencies ?shiny?, ?miniUI? are not available for package
> ?manipulateWidget?
> * removing
?/home/ernes/R/x86_64-pc-linux-gnu-library/3.5/manipulateWidget?> ERROR: dependency ?car? is not available for package ?RcmdrMisc?
> * removing ?/home/ernes/R/x86_64-pc-linux-gnu-library/3.5/RcmdrMisc?
> ERROR: dependency ?mi? is not available for package ?sem?
> * removing ?/home/ernes/R/x86_64-pc-linux-gnu-library/3.5/sem?
> ERROR: dependencies ?shiny?, ?crosstalk?, ?manipulateWidget? are not
> available for package ?rgl?
> * removing ?/home/ernes/R/x86_64-pc-linux-gnu-library/3.5/rgl?
> ERROR: dependencies ?RcmdrMisc?, ?car? are not available for package
?Rcmdr?> * removing ?/home/ernes/R/x86_64-pc-linux-gnu-library/3.5/Rcmdr?
>
> The downloaded source packages are in
> ?/tmp/Rtmp96RN5M/downloaded_packages?
> There were 14 warnings (use warnings() to see them)
>
> --And this show up when I try just install.packages()
>
> * installing *source* package ?rio? ...
> ** package ?rio? successfully unpacked and MD5 sums checked
> ** R
> ** inst
> ** byte-compile and prepare package for lazy loading
> Error : package ?data.table? was installed by an R version with different
> internals; it needs to be reinstalled for use with this R version
> ERROR: lazy loading failed for package ?rio?
> * removing ?/home/ernes/R/x86_64-pc-linux-gnu-library/3.5/rio?
> * installing *source* package ?effects? ...
> ** package ?effects? successfully unpacked and MD5 sums checked
> ** R
> ** inst
> ** byte-compile and prepare package for lazy loading
> Error : package ?colorspace? was installed by an R version with different
> internals; it needs to be reinstalled for use with this R version
> ERROR: lazy loading failed for package ?effects?
> * removing ?/home/ernes/R/x86_64-pc-linux-gnu-library/3.5/effects?
> ERROR: dependency ?rio? is not available for package ?car?
> * removing ?/home/ernes/R/x86_64-pc-linux-gnu-library/3.5/car?
> ERROR: dependency ?car? is not available for package ?RcmdrMisc?
> * removing ?/home/ernes/R/x86_64-pc-linux-gnu-library/3.5/RcmdrMisc?
> ERROR: dependencies ?RcmdrMisc?, ?car? are not available for package
?Rcmdr?> * removing ?/home/ernes/R/x86_64-pc-linux-gnu-library/3.5/Rcmdr?
>
> The downloaded source packages are in
> ?/tmp/Rtmp96RN5M/downloaded_packages?
> Warning messages:
> 1: In install.packages("Rcmdr") :
> installation of package ?rio? had non-zero exit status
> 2: In install.packages("Rcmdr") :
> installation of package ?effects? had non-zero exit status
> 3: In install.packages("Rcmdr") :
> installation of package ?car? had non-zero exit status
> 4: In install.packages("Rcmdr") :
> installation of package ?RcmdrMisc? had non-zero exit status
> 5: In install.packages("Rcmdr") :
> installation of package ?Rcmdr? had non-zero exit status
>
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>
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--
George N. White III
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