thr3ads.net - R SIG Debian - [R-sig-Debian] Trying to upgrade from R 2.7.1 [May 2010]

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Michael Friendly

2010-May-27 14:40 UTC

[R-sig-Debian] Trying to upgrade from R 2.7.1

[Running debian stable]

I followed the instructions at 
http://cran.r-project.org/bin/linux/debian, adding
deb http://cran.R-project.org/bin/linux/debian lenny-cran/
to /etc/apt/sources.list.  But apt-get still leaves me with R 2.7.1.

How can I diagnose what's wrong or correct this?

euclid: /etc/apt # apt-get update
Hit http://debian.yorku.ca stable Release.gpg
Ign http://debian.yorku.ca stable/main 
Translation-en_CA                                      
Hit http://debian.yorku.ca stable/updates 
Release.gpg                                         
Ign http://debian.yorku.ca stable/updates/main Translation-en_CA         
Hit http://debian.yorku.ca testing Release.gpg                           
Ign http://debian.yorku.ca testing/main Translation-en_CA                
Hit http://debian.yorku.ca stable Release                                
Hit http://debian.yorku.ca stable/updates Release                        
Hit http://debian.yorku.ca testing Release                               
Ign http://debian.yorku.ca stable/main 
Packages/DiffIndex                                           
Ign http://debian.yorku.ca stable/main 
Sources/DiffIndex                                            
Hit http://debian.yorku.ca stable/main 
Packages                                               
Hit http://debian.yorku.ca stable/main 
Sources                                                
Ign http://debian.yorku.ca stable/updates/main 
Packages/DiffIndex                                   
Hit http://debian.yorku.ca stable/updates/main 
Packages                                             
Hit http://debian.yorku.ca testing/main 
Packages/DiffIndex                                    
Hit http://security.debian.org stable/updates Release.gpg                
Ign http://security.debian.org stable/updates/main Translation-en_CA     
Get: 1 http://cran.R-project.org lenny-cran/ Release.gpg [197B]          
Ign http://cran.R-project.org lenny-cran/ Translation-en_CA              
Hit http://security.debian.org stable/updates Release                    
Ign http://security.debian.org stable/updates/main Packages/DiffIndex
Get: 2 http://cran.R-project.org lenny-cran/ Release [1288B]
Hit http://security.debian.org stable/updates/main Packages
Ign http://cran.R-project.org lenny-cran/ Packages
Get: 3 http://cran.R-project.org lenny-cran/ Packages [11.1kB]
Fetched 12.5kB in 2s (5597B/s) 
Reading package lists... Done


euclid: /etc/apt # apt-get -t unstable install r-base r-base-dev
Reading package lists... Done
Building dependency tree      
Reading state information... Done
r-base is already the newest version.
r-base-dev is already the newest version.
0 upgraded, 0 newly installed, 0 to remove and 715 not upgraded.

euclid: /etc/apt # R --version
R version 2.7.1 (2008-06-23)
Copyright (C) 2008 The R Foundation for Statistical Computing
ISBN 3-900051-07-0


-- 
Michael Friendly     Email: friendly at yorku.ca 
Professor, Psychology Dept.
York University      Voice: 416 736-5115 x66249 Fax: 416 736-5814
4700 Keele Street    http://datvis.ca
Toronto, ONT  M3J 1P3 CANADA

Paul Johnson

2010-May-27 16:24 UTC

head link

[R-sig-Debian] Trying to upgrade from R 2.7.1

On Thu, May 27, 2010 at 9:40 AM, Michael Friendly <friendly at yorku.ca>
wrote:> [Running debian stable]
>
> I followed the instructions at http://cran.r-project.org/bin/linux/debian,
> adding
> deb http://cran.R-project.org/bin/linux/debian lenny-cran/
> to /etc/apt/sources.list. ?But apt-get still leaves me with R 2.7.1.
>
> How can I diagnose what's wrong or correct this?
>

Hi, Michael.

I don't do Debian, but I have Ubuntu and know a bit about packaging
problems.

I believe the problem is this.  If you go to

> euclid: /etc/apt # apt-get update
> Hit http://debian.yorku.ca stable Release.gpg
> Ign http://debian.yorku.ca stable/main Translation-en_CA
> ? ? ? ? ? ? ? ? ?Hit http://debian.yorku.ca stable/updates Release.gpg
> ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? Ign http://debian.yorku.ca
> stable/updates/main Translation-en_CA ? ? ? ? Hit http://debian.yorku.ca
> testing Release.gpg ? ? ? ? ? ? ? ? ? ? ? ? ? Ign http://debian.yorku.ca
> testing/main Translation-en_CA ? ? ? ? ? ? ? ?Hit http://debian.yorku.ca
> stable Release ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?Hit http://debian.yorku.ca
> stable/updates Release ? ? ? ? ? ? ? ? ? ? ? ?Hit http://debian.yorku.ca
> testing Release ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? Ign http://debian.yorku.ca
> stable/main Packages/DiffIndex ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
Ign
> http://debian.yorku.ca stable/main Sources/DiffIndex
> ? ? ? ? ? ? ? ? ? ?Hit http://debian.yorku.ca stable/main Packages
> ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? Hit http://debian.yorku.ca stable/main
> Sources ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?Ign
> http://debian.yorku.ca stable/updates/main Packages/DiffIndex
> ? ? ? ? ? ? ? ? ? ? Hit http://debian.yorku.ca stable/updates/main Packages
> ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? Hit http://debian.yorku.ca
> testing/main Packages/DiffIndex ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?Hit
> http://security.debian.org stable/updates Release.gpg ? ? ? ? ? ? ? ?Ign
> http://security.debian.org stable/updates/main Translation-en_CA ? ? Get: 1
> http://cran.R-project.org lenny-cran/ Release.gpg [197B] ? ? ? ? ?Ign
> http://cran.R-project.org lenny-cran/ Translation-en_CA ? ? ? ? ? ? ?Hit
> http://security.debian.org stable/updates Release ? ? ? ? ? ? ? ? ? ?Ign
> http://security.debian.org stable/updates/main Packages/DiffIndex
> Get: 2 http://cran.R-project.org lenny-cran/ Release [1288B]
> Hit http://security.debian.org stable/updates/main Packages
> Ign http://cran.R-project.org lenny-cran/ Packages
> Get: 3 http://cran.R-project.org lenny-cran/ Packages [11.1kB]
> Fetched 12.5kB in 2s (5597B/s) Reading package lists... Done
>
>
> euclid: /etc/apt # apt-get -t unstable install r-base r-base-dev
> Reading package lists... Done
> Building dependency tree ? ? ?Reading state information... Done
> r-base is already the newest version.
> r-base-dev is already the newest version.
> 0 upgraded, 0 newly installed, 0 to remove and 715 not upgraded.
>
> euclid: /etc/apt # R --version
> R version 2.7.1 (2008-06-23)
> Copyright (C) 2008 The R Foundation for Statistical Computing
> ISBN 3-900051-07-0
>
>
> --
> Michael Friendly ? ? Email: friendly at yorku.ca Professor, Psychology
Dept.
> York University ? ? ?Voice: 416 736-5115 x66249 Fax: 416 736-5814
> 4700 Keele Street ? ?http://datvis.ca
> Toronto, ONT ?M3J 1P3 CANADA
>
> _______________________________________________
> R-SIG-Debian mailing list
> R-SIG-Debian at r-project.org
> https://stat.ethz.ch/mailman/listinfo/r-sig-debian
>


-- 
Paul E. Johnson
Professor, Political Science
1541 Lilac Lane, Room 504
University of Kansas

Johannes Ranke

2010-May-30 16:17 UTC

head link

[R-sig-Debian] Trying to upgrade from R 2.7.1

Hi,

Am Donnerstag, 27. Mai 2010, um 16:40:53 schrieb Michael
Friendly:> [Running debian stable]
> 
> I followed the instructions at
> http://cran.r-project.org/bin/linux/debian, adding
> deb http://cran.R-project.org/bin/linux/debian lenny-cran/
> to /etc/apt/sources.list.  But apt-get still leaves me with R 2.7.1.
> 
> How can I diagnose what's wrong or correct this?
> 
> euclid: /etc/apt # apt-get update
> Hit http://debian.yorku.ca stable Release.gpg
> Ign http://debian.yorku.ca stable/main
> Translation-en_CA
> Hit http://debian.yorku.ca stable/updates
> Release.gpg
> Ign http://debian.yorku.ca stable/updates/main Translation-en_CA
> Hit http://debian.yorku.ca testing Release.gpg
> Ign http://debian.yorku.ca testing/main Translation-en_CA
> Hit http://debian.yorku.ca stable Release
> Hit http://debian.yorku.ca stable/updates Release
> Hit http://debian.yorku.ca testing Release
> Ign http://debian.yorku.ca stable/main
> Packages/DiffIndex
> Ign http://debian.yorku.ca stable/main
> Sources/DiffIndex
> Hit http://debian.yorku.ca stable/main
> Packages
> Hit http://debian.yorku.ca stable/main
> Sources
> Ign http://debian.yorku.ca stable/updates/main
> Packages/DiffIndex
> Hit http://debian.yorku.ca stable/updates/main
> Packages
> Hit http://debian.yorku.ca testing/main
> Packages/DiffIndex
> Hit http://security.debian.org stable/updates Release.gpg
> Ign http://security.debian.org stable/updates/main Translation-en_CA
> Get: 1 http://cran.R-project.org lenny-cran/ Release.gpg [197B]
> Ign http://cran.R-project.org lenny-cran/ Translation-en_CA
> Hit http://security.debian.org stable/updates Release
> Ign http://security.debian.org stable/updates/main Packages/DiffIndex
> Get: 2 http://cran.R-project.org lenny-cran/ Release [1288B]
> Hit http://security.debian.org stable/updates/main Packages
> Ign http://cran.R-project.org lenny-cran/ Packages
> Get: 3 http://cran.R-project.org lenny-cran/ Packages [11.1kB]
> Fetched 12.5kB in 2s (5597B/s)
> Reading package lists... Done
> 
> 
> euclid: /etc/apt # apt-get -t unstable install r-base r-base-dev
Why did you use -t unstable? The distribution on CRAN for lenny is called 
lenny-cran, not unstable. Anyway, tagging should not be necessary. What does

apt-cache policy r-base-core

tell you? It should list both R 2.7.1 from lenny and R 2.11.0 from lenny-cran.

Kind regards,

Johannes

> Reading package lists... Done
> Building dependency tree
> Reading state information... Done
> r-base is already the newest version.
> r-base-dev is already the newest version.
> 0 upgraded, 0 newly installed, 0 to remove and 715 not upgraded.
> 
> euclid: /etc/apt # R --version
> R version 2.7.1 (2008-06-23)
> Copyright (C) 2008 The R Foundation for Statistical Computing
> ISBN 3-900051-07-0

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