Perhaps read the Posting Guide, note that there is a special mailing list for
MacOSX-specific questions, and post there instead?
You don't appear to have installed gfortran. I am aware that there are
specific instructions for getting that installed in MacOS that you need to find
and follow [1].
[1] https://cran.r-project.org/bin/macosx/tools/
On April 23, 2023 4:41:59 AM GMT+09:00, varin sacha via R-help <r-help at
r-project.org> wrote:>Me again ! How to solve this?
>
>At the end of this page there is the installation command :
>https://gitlab.science.ru.nl/gbucur/RUcausal/-/blob/master/README.Rmd
>
>Working with a MAC, I have tried to install the RUcausal library (copy and
paste the installation command).
>
>It is written that the package has been built on Linux using the GNU
Compiler Collection. To install the package, open an R instance and run:
>install.packages('devtools') # required package
>devtools::install_git('https://gitlab.science.ru.nl/gbucur/RUcausal')
>
>I get this error message :
>
>? ERROR: package installation failed
>Error: Failed to install 'RUcausal' from Git:
>? ! System command 'R' failed
>0d0bz2p4xg640000gn/T/RtmpMs1teQ/Rinst6453ee77bb8/RUcausal?
>
>
>
>install.packages('devtools') # required package
>--- Please select a CRAN mirror for use in this session ---
>trying URL
'https://stat.ethz.ch/CRAN/bin/macosx/big-sur-arm64/contrib/4.2/devtools_2.4.5.tgz'
>Content type 'application/x-gzip' length 421790 bytes (411 KB)
>=================================================>downloaded 411 KB
>
>
>The downloaded binary packages are in
>????/var/folders/t_/myv0vvms11g40d0bz2p4xg640000gn/T//Rtmp7SUtUd/downloaded_packages
>>
devtools::install_git('https://gitlab.science.ru.nl/gbucur/RUcausal')
>Downloading git repo https://gitlab.science.ru.nl/gbucur/RUcausal
>'/usr/bin/git' clone --depth 1 --no-hardlinks
https://gitlab.science.ru.nl/gbucur/RUcausal
/var/folders/t_/myv0vvms11g40d0bz2p4xg640000gn/T//Rtmp7SUtUd/file61a2a8e336a
>?? R CMD build
??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
>? installing the package to process help pages
>? -----------------------------------ges
>? installing *source* package ?RUcausal? ...
>? ** using staged installation
>? ** libs
>? clang++ -arch arm64 -std=gnu++14
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/RcppArmadillo/include'
-I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -Wall -pedantic
-c RcppExports.cpp -o RcppExports.o
>? clang++ -arch arm64 -std=gnu++14
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/RcppArmadillo/include'
-I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -Wall -pedantic
-c compute_DAG_probabilities_BGe_fast.cpp -o
compute_DAG_probabilities_BGe_fast.o
>? clang++ -arch arm64 -std=gnu++14 -dynamiclib
-Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module
-multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib
-L/opt/R/arm64/lib -o RUcausal.so RcppExports.o
compute_DAG_probabilities_BGe_fast.o
-L/Library/Frameworks/R.framework/Resources/lib -lRlapack
-L/Library/Frameworks/R.framework/Resources/lib -lRblas
-L/opt/R/arm64/gfortran/lib/gcc/aarch64-apple-darwin20.6.0/12.0.1
-L/opt/R/arm64/gfortran/lib -lgfortran -lemutls_w -lquadmath
-F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework
-Wl,CoreFoundation
>? ld: warning: directory not found for option
'-L/opt/R/arm64/gfortran/lib/gcc/aarch64-apple-darwin20.6.0/12.0.1'
>? ld: warning: directory not found for option
'-L/opt/R/arm64/gfortran/lib'
>? ld: library not found for -lgfortran
>? clang: error: linker command failed with exit code 1 (use -v to see
invocation)
>? make: *** [RUcausal.so] Error 1
>? ERROR: compilation failed for package ?RUcausal?
>? removing
?/private/var/folders/t_/myv0vvms11g40d0bz2p4xg640000gn/T/RtmpMs1teQ/Rinst6453ee77bb8/RUcausal?
>? -----------------------------------
>? ERROR: package installation failed
>Error: Failed to install 'RUcausal' from Git:
>? ! System command 'R' failed
>0d0bz2p4xg640000gn/T/RtmpMs1teQ/Rinst6453ee77bb8/RUcausal?
>
>______________________________________________
>R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
>https://stat.ethz.ch/mailman/listinfo/r-help
>PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
>and provide commented, minimal, self-contained, reproducible code.
--
Sent from my phone. Please excuse my brevity.