Hi using some of my own data I am trying to reproduce examples from this
tutorial:
https://cran.r-project.org/web/packages/finalfit/vignettes/finalfit_basics.html
Here are my sys info:
R version 3.5.1 (2018-07-02)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows Server >= 2012 x64 (build 9200)
Here is my data structure:
str(df6)
# 'data.frame': 78407 obs. of 6 variables:
# $ ProductName : Factor w/ 2 levels "Editing","OON": 2
2 2 2 2 2 2 2 2 2 ...
# $ RevCodeCats : Factor w/ 20 levels "BHAccomodations",..: 10 10
12 12 8 8 12 20 8 19 ...
# $ AgeCat : Factor w/ 10 levels
"[>80]","[0-5]",..: 9 9 5 5 7 4 7 7 7 9 ...
# $ PatientGender : Factor w/ 3 levels
"F","M","U": 2 2 2 2 2 1 1 1 1 1 ...
# $ AcceptedSavings: num 0 0 0 0 48.9 ...
# $ BinaryAccSav : Factor w/ 2 levels "0","1": 1 1 1 1 2 2
2 2 2 2 ...
Here is my call:
explanatory = c("ProductName", "AgeCat",
"PatientGender")
dependent = "BinaryAccSav"
#------------------------------------------------------- AcceptedSavings 1=Y 0=N
df6 %>% finalfit(dependent, explanatory, p=TRUE, add_dependent_label=TRUE)
-> t1 knitr::kable(t1, row.names=FALSE, align=c("l", "l",
"r", "r", "r"))
Here is the error:
#Error: unexpected symbol in " df6 %>% finalfit(dependent, explanatory,
p=TRUE, add_dependent_label=TRUE) -> t1 knitr"
The error is identifying the knitr::kable(t1, row.names=FALSE,
align=c("l", "l", "r", "r",
"r")) as the problem
I believe I have copied the procedure correctly from the tutorial and replaced
the tutorial variables with mine.
Libraries I believe are necessary:
library("knitr", lib.loc="~/R/win-library/3.5")
library("rmarkdown", lib.loc="~/R/win-library/3.5")
library("htmlTable", lib.loc="~/R/win-library/3.5")
And I see --Warning in install.packages : package 'kable' is not
available (for R version 3.5.1) which I believe is my problem?
1. can my hunch be validated by someone please?
2. Is there a solution for this?
3. or do I contact the package authors directly?
Thank you all!
WHP
Confidentiality Notice This message is sent from Zelis. ...{{dropped:15}}
R syntax does not allow for objects to be plopped next to each other separated by a space. There should be a newline after the t1 variable. This kind of problem plagues people copying HTML into emails on this mailing list (losing newlines), and was probably introduced into your code during a copy-paste as well. There is no package called "kable"... that is a function in the knitr package. My advice is to enter one line of each example at a time and study what it does before proceeding to the next line. Copying whole swathes of code and marveling at the result is exhilarating but ultimately leaves you handicapped in creating your own code. On August 8, 2018 6:49:18 AM PDT, Bill Poling <Bill.Poling at zelis.com> wrote:>Hi using some of my own data I am trying to reproduce examples from >this tutorial: > >https://cran.r-project.org/web/packages/finalfit/vignettes/finalfit_basics.html > >Here are my sys info: >R version 3.5.1 (2018-07-02) >Platform: x86_64-w64-mingw32/x64 (64-bit) >Running under: Windows Server >= 2012 x64 (build 9200) > >Here is my data structure: >str(df6) ># 'data.frame': 78407 obs. of 6 variables: ># $ ProductName : Factor w/ 2 levels "Editing","OON": 2 2 2 2 2 2 >2 2 2 2 ... ># $ RevCodeCats : Factor w/ 20 levels "BHAccomodations",..: 10 10 12 >12 8 8 12 20 8 19 ... ># $ AgeCat : Factor w/ 10 levels "[>80]","[0-5]",..: 9 9 5 5 7 >4 7 7 7 9 ... ># $ PatientGender : Factor w/ 3 levels "F","M","U": 2 2 2 2 2 1 1 1 1 >1 ... ># $ AcceptedSavings: num 0 0 0 0 48.9 ... ># $ BinaryAccSav : Factor w/ 2 levels "0","1": 1 1 1 1 2 2 2 2 2 2 >... > >Here is my call: > >explanatory = c("ProductName", "AgeCat", "PatientGender") >dependent = "BinaryAccSav" >#------------------------------------------------------- >AcceptedSavings 1=Y 0=N >df6 %>% finalfit(dependent, explanatory, p=TRUE, >add_dependent_label=TRUE) -> t1 knitr::kable(t1, row.names=FALSE, >align=c("l", "l", "r", "r", "r")) > >Here is the error: >#Error: unexpected symbol in " df6 %>% finalfit(dependent, >explanatory, p=TRUE, add_dependent_label=TRUE) -> t1 knitr" > >The error is identifying the knitr::kable(t1, row.names=FALSE, >align=c("l", "l", "r", "r", "r")) as the problem > >I believe I have copied the procedure correctly from the tutorial and >replaced the tutorial variables with mine. > >Libraries I believe are necessary: >library("knitr", lib.loc="~/R/win-library/3.5") >library("rmarkdown", lib.loc="~/R/win-library/3.5") >library("htmlTable", lib.loc="~/R/win-library/3.5") > >And I see --Warning in install.packages : package 'kable' is not >available (for R version 3.5.1) which I believe is my problem? > > > 1. can my hunch be validated by someone please? > 2. Is there a solution for this? > 3. or do I contact the package authors directly? > >Thank you all! > >WHP > > >Confidentiality Notice This message is sent from Zelis. >...{{dropped:15}} > >______________________________________________ >R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see >https://stat.ethz.ch/mailman/listinfo/r-help >PLEASE do read the posting guide >http://www.R-project.org/posting-guide.html >and provide commented, minimal, self-contained, reproducible code.-- Sent from my phone. Please excuse my brevity.
(From Jeff Newmiller) "My advice is to enter one line of each example at a time and study what it does before proceeding to the next line. Copying whole swathes of code and marveling at the result is exhilarating but ultimately leaves you handicapped in creating your own code." Fortune nomination! Cheers, Bert Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it." -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) On Wed, Aug 8, 2018 at 8:06 AM, Jeff Newmiller <jdnewmil at dcn.davis.ca.us> wrote:> R syntax does not allow for objects to be plopped next to each other > separated by a space. There should be a newline after the t1 variable. This > kind of problem plagues people copying HTML into emails on this mailing > list (losing newlines), and was probably introduced into your code during a > copy-paste as well. > > There is no package called "kable"... that is a function in the knitr > package. > > My advice is to enter one line of each example at a time and study what it > does before proceeding to the next line. Copying whole swathes of code and > marveling at the result is exhilarating but ultimately leaves you > handicapped in creating your own code. > > On August 8, 2018 6:49:18 AM PDT, Bill Poling <Bill.Poling at zelis.com> > wrote: > >Hi using some of my own data I am trying to reproduce examples from > >this tutorial: > > > >https://cran.r-project.org/web/packages/finalfit/vignettes/ > finalfit_basics.html > > > >Here are my sys info: > >R version 3.5.1 (2018-07-02) > >Platform: x86_64-w64-mingw32/x64 (64-bit) > >Running under: Windows Server >= 2012 x64 (build 9200) > > > >Here is my data structure: > >str(df6) > ># 'data.frame': 78407 obs. of 6 variables: > ># $ ProductName : Factor w/ 2 levels "Editing","OON": 2 2 2 2 2 2 > >2 2 2 2 ... > ># $ RevCodeCats : Factor w/ 20 levels "BHAccomodations",..: 10 10 12 > >12 8 8 12 20 8 19 ... > ># $ AgeCat : Factor w/ 10 levels "[>80]","[0-5]",..: 9 9 5 5 7 > >4 7 7 7 9 ... > ># $ PatientGender : Factor w/ 3 levels "F","M","U": 2 2 2 2 2 1 1 1 1 > >1 ... > ># $ AcceptedSavings: num 0 0 0 0 48.9 ... > ># $ BinaryAccSav : Factor w/ 2 levels "0","1": 1 1 1 1 2 2 2 2 2 2 > >... > > > >Here is my call: > > > >explanatory = c("ProductName", "AgeCat", "PatientGender") > >dependent = "BinaryAccSav" > >#------------------------------------------------------- > >AcceptedSavings 1=Y 0=N > >df6 %>% finalfit(dependent, explanatory, p=TRUE, > >add_dependent_label=TRUE) -> t1 knitr::kable(t1, row.names=FALSE, > >align=c("l", "l", "r", "r", "r")) > > > >Here is the error: > >#Error: unexpected symbol in " df6 %>% finalfit(dependent, > >explanatory, p=TRUE, add_dependent_label=TRUE) -> t1 knitr" > > > >The error is identifying the knitr::kable(t1, row.names=FALSE, > >align=c("l", "l", "r", "r", "r")) as the problem > > > >I believe I have copied the procedure correctly from the tutorial and > >replaced the tutorial variables with mine. > > > >Libraries I believe are necessary: > >library("knitr", lib.loc="~/R/win-library/3.5") > >library("rmarkdown", lib.loc="~/R/win-library/3.5") > >library("htmlTable", lib.loc="~/R/win-library/3.5") > > > >And I see --Warning in install.packages : package 'kable' is not > >available (for R version 3.5.1) which I believe is my problem? > > > > > > 1. can my hunch be validated by someone please? > > 2. Is there a solution for this? > > 3. or do I contact the package authors directly? > > > >Thank you all! > > > >WHP > > > > > >Confidentiality Notice This message is sent from Zelis. > >...{{dropped:15}} > > > >______________________________________________ > >R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see > >https://stat.ethz.ch/mailman/listinfo/r-help > >PLEASE do read the posting guide > >http://www.R-project.org/posting-guide.html > >and provide commented, minimal, self-contained, reproducible code. > > -- > Sent from my phone. Please excuse my brevity. > > ______________________________________________ > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posti > ng-guide.html > and provide commented, minimal, self-contained, reproducible code. >[[alternative HTML version deleted]]
>>>>> Bert Gunter >>>>> on Wed, 8 Aug 2018 08:21:05 -0700 writes:> (From Jeff Newmiller) "My advice is to enter one line of > each example at a time and study what it does before > proceeding to the next line. Copying whole swathes of code > and marveling at the result is exhilarating but ultimately > leaves you handicapped in creating your own code." > Fortune nomination! seconded! Martin > Cheers, Bert > Bert Gunter
Wow, thank you Jeff, that?s got it!
explanatory = c("ProductName", "AgeCat",
"PatientGender","RevCodeCats")
View(explanatory)
dependent = "BinaryAccSav" #
---------------------------------------------------- AcceptedSavings
AcceptedSavings 1=Y 0=N
View(dependent)
df6 %>% summary_factorlist(dependent, explanatory, p=TRUE,
add_dependent_label=TRUE) -> t1
View(t1)
knitr::kable(t1, row.names=FALSE, align=c("l", "l",
"r", "r", "r"))
WHP
From: Jeff Newmiller <jdnewmil at dcn.davis.ca.us>
Sent: Wednesday, August 08, 2018 11:07 AM
To: r-help at r-project.org; Bill Poling <Bill.Poling at zelis.com>;
r-help (r-help at r-project.org) <r-help at r-project.org>
Subject: Re: [R] Help with finalfit and knitr
R syntax does not allow for objects to be plopped next to each other separated
by a space. There should be a newline after the t1 variable. This kind of
problem plagues people copying HTML into emails on this mailing list (losing
newlines), and was probably introduced into your code during a copy-paste as
well.
There is no package called "kable"... that is a function in the knitr
package.
My advice is to enter one line of each example at a time and study what it does
before proceeding to the next line. Copying whole swathes of code and marveling
at the result is exhilarating but ultimately leaves you handicapped in creating
your own code.
On August 8, 2018 6:49:18 AM PDT, Bill Poling <Bill.Poling at
zelis.com<mailto:Bill.Poling at zelis.com>>
wrote:>Hi using some of my own data I am trying to reproduce examples from
>this tutorial:
>
>https://cran.r-project.org/web/packages/finalfit/vignettes/finalfit_basics.html<https://cran.r-project.org/web/packages/finalfit/vignettes/finalfit_basics.html>
>
>Here are my sys info:
>R version 3.5.1 (2018-07-02)
>Platform: x86_64-w64-mingw32/x64 (64-bit)
>Running under: Windows Server >= 2012 x64 (build 9200)
>
>Here is my data structure:
>str(df6)
># 'data.frame': 78407 obs. of 6 variables:
># $ ProductName : Factor w/ 2 levels "Editing","OON": 2
2 2 2 2 2
>2 2 2 2 ...
># $ RevCodeCats : Factor w/ 20 levels "BHAccomodations",..: 10 10
12
>12 8 8 12 20 8 19 ...
># $ AgeCat : Factor w/ 10 levels "[>80]","[0-5]",..:
9 9 5 5 7
>4 7 7 7 9 ...
># $ PatientGender : Factor w/ 3 levels
"F","M","U": 2 2 2 2 2 1 1 1 1
>1 ...
># $ AcceptedSavings: num 0 0 0 0 48.9 ...
># $ BinaryAccSav : Factor w/ 2 levels "0","1": 1 1 1 1 2
2 2 2 2 2
>...
>
>Here is my call:
>
>explanatory = c("ProductName", "AgeCat",
"PatientGender")
>dependent = "BinaryAccSav"
>#-------------------------------------------------------
>AcceptedSavings 1=Y 0=N
>df6 %>% finalfit(dependent, explanatory, p=TRUE,
>add_dependent_label=TRUE) -> t1 knitr::kable(t1, row.names=FALSE,
>align=c("l", "l", "r", "r",
"r"))
>
>Here is the error:
>#Error: unexpected symbol in " df6 %>% finalfit(dependent,
>explanatory, p=TRUE, add_dependent_label=TRUE) -> t1 knitr"
>
>The error is identifying the knitr::kable(t1, row.names=FALSE,
>align=c("l", "l", "r", "r",
"r")) as the problem
>
>I believe I have copied the procedure correctly from the tutorial and
>replaced the tutorial variables with mine.
>
>Libraries I believe are necessary:
>library("knitr", lib.loc="~/R/win-library/3.5")
>library("rmarkdown", lib.loc="~/R/win-library/3.5")
>library("htmlTable", lib.loc="~/R/win-library/3.5")
>
>And I see --Warning in install.packages : package 'kable' is not
>available (for R version 3.5.1) which I believe is my problem?
>
>
> 1. can my hunch be validated by someone please?
> 2. Is there a solution for this?
> 3. or do I contact the package authors directly?
>
>Thank you all!
>
>WHP
>
>
>Confidentiality Notice This message is sent from Zelis.
>...{{dropped:15}}
>
>______________________________________________
>R-help at r-project.org<mailto:R-help at r-project.org> mailing list
-- To UNSUBSCRIBE and more, see
>https://stat.ethz.ch/mailman/listinfo/r-help<https://stat.ethz.ch/mailman/listinfo/r-help>
>PLEASE do read the posting guide
>http://www.R-project.org/posting-guide.html<http://www.R-project.org/posting-guide.html>
>and provide commented, minimal, self-contained, reproducible code.
--
Sent from my phone. Please excuse my brevity.
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[[alternative HTML version deleted]]