HI R users,
I construct dendrogram tree and cut the tree into different clusters, then
generate survival curves by the following three functions. All variables are
included in an inputfile.
Can you help me to consolidate the following three function into one functions?
I thought about using if else function, but not sure how to do it.
Thank you,
Ding
# function to generate RFS
RFS2cluster <- function( inputfile ) {
cluster2<- survfit(Surv(RFS_days, OV_Had_a_Recurrence_CODE) ~ clusters,
data = inputfile)
ggsurvplot(cluster2, data = inputfile, risk.table = F,
palette = c("red", "black"),
ylim=c(0,1),
ggtheme = theme_bw(),
xlab="Relapse Free Suvival (Days)",
main = "Survival curve",
pval = TRUE,
font.x = 16,
font.y = 16,
font.tickslab = 14,
font.legend =c(14,"plain","black"),
legend = "bottom",
legend.title = "Tree Cluster",
legend.labs = c("Cluster1", "Cluster2"), lty=1,
lwd=3)
}
RFS3cluster <- function( inputfile ) {
cluster3<- survfit(Surv(RFS_days, OV_Had_a_Recurrence_CODE) ~ clusters,
data = inputfile)
ggsurvplot(cluster3, data = inputfile, risk.table = F,
palette = c("red", "black", "green"),
ylim=c(0,1),
ggtheme = theme_bw(),
xlab="Relapse Free Suvival (Days)",
main = "Survival curve",
pval = TRUE,
font.x = 16,
font.y = 16,
font.tickslab = 14,
font.legend =c(14,"plain","black"),
legend = "bottom",
legend.title = "Tree Cluster",
legend.labs = c("Cluster1", "Cluster2",
"Cluster3"), lty=1, lwd=3)
}
RFS4cluster <- function( inputfile ) {
cluster4<- survfit(Surv(RFS_days, OV_Had_a_Recurrence_CODE) ~ clusters,
data = inputfile)
ggsurvplot(cluster4, data = inputfile, risk.table = F,
palette = c("red", "black", "green",
"blue"),
ylim=c(0,1),
ggtheme = theme_bw(),
xlab="Relapse Free Suvival (Days)",
main = "Survival curve",
pval = TRUE,
font.x = 16,
font.y = 16,
font.tickslab = 14,
font.legend =c(14,"plain","black"),
legend = "bottom",
legend.title = "Tree Cluster",
legend.labs = c("Cluster1", "Cluster2",
"Cluster3", "Cluster4"), lty=1, lwd=3)
}
-----Original Message-----
From: R-help [mailto:r-help-bounces at r-project.org] On Behalf Of imane hajar
Sent: Friday, January 12, 2018 7:42 AM
To: r-help at r-project.org
Subject: [R] Help with packages (methods, stats, stats4)
[Attention: This email came from an external source. Do not open attachments or
click on links from unknown senders or unexpected emails.]
hello,
Can you please give me a hand with this problem,well i can't install these
packages:
- stats
- methods
- stats4
when i tried the following command : *library(help = "stats") * , it
gave me this output (*see picture*), so i contacted the Maintainer of the
package at (*R-core at r-project.org <R-core at r-project.org>*) but he
said that i write to the wrong place.
(i want to install those packages in order to use the "DVstats"
package)
(i have the latest version of R (3.4.3 ) and Rstudio(1.2.240) )
thank you
Regards
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