R help - Jul 2017 - To Supporting graphpad prism in R, add external library to poratbleR

Hi Jeff,

1). I have tried install.packages( c("dplyr", "tidyr" ) )
into the r-script
file got below error:-
> install.packages( c("dplyr", "tidyr" ) )
Installing packages into
?/tmp/1776492876238396447/lib/portableR-master/site-library?
(as ?lib? is unspecified)
Error in install.packages(c("dplyr", "tidyr")) :
  This version of R is not set up to install source packages
If it was installed from an RPM, you may need the R-devel RPM
Execution halted

2). I have also tried these steps in R-console (install.packages(
c("dplyr", "tidyr" ) )), able to install these library into
linux based R
machine. after that tried to copy the lib folder to my portable R site
library folder got the various error but i have resolved many now getting
below error which unable to resolve

Error in dyn.load(file, DLLpath = DLLpath, ...) :
  unable to load shared object
'/tmp/3971881046757600243/lib/portableR-master/site-library/Rcpp/libs/Rcpp.so':
  /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.20' not found (required
by
/tmp/3971881046757600243/lib/portableR-master/site-library/Rcpp/libs/Rcpp.so)
Error: package or namespace load failed for ?dplyr?
Execution halted


Thanks
Ashish Ranjan



On Tue, Jul 25, 2017 at 7:09 PM, Jeff Newmiller <jdnewmil at
dcn.davis.ca.us>
wrote:
> 1) Definitely yes. They are on CRAN. Just type
>
> install.packages( c("dplyr", "tidyr" ) )
>
> at the R console.
>
> 2) Don't know, but most likely the answer is yes. Since all R packages
on
> Linux are compiled by R when installed, you either need to activate your
> virtual machine, compile the packages, and save the state for future use,
> or you have to build the package library on another compatible architecture
> and copy the library into the VM image. I suggest you read the portableR
> documentation and the R Installation and Administration manual.
> --
> Sent from my phone. Please excuse my brevity.
>
> On July 25, 2017 3:43:11 AM PDT, Ashish Ranjan <aranjan1645 at
gmail.com>
> wrote:
> >Hi Team,
> >
> >Please suggest me on below :-
> >
> >1).are There any linux based library for dplyr and tidyr? I could find
> >these r-libraries for windows and Mac but not for linux. 2). is it
> >possible
> >to add external library to portableR
> >zip(http://nafiux.github.io/portableR/)
> >file if yes then how to add external library to poratbleR zip file?
> >
> >In our application AWS lambda invoking the R-script by using portableR
> >zip
> >file.we want to add new external dplyr library to this poratbleR zip
> >file.
> >
> >
> >Thanks
> >
> >Ashish Ranjan
> >
> >       [[alternative HTML version deleted]]
> >
> >______________________________________________
> >R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
> >https://stat.ethz.ch/mailman/listinfo/r-help
> >PLEASE do read the posting guide
> >http://www.R-project.org/posting-guide.html
> >and provide commented, minimal, self-contained, reproducible code.
>
	[[alternative HTML version deleted]]

I really don't know about this special-purpose distribution of R... you
should probably contact the developer.

From the error, I wonder whether you followed the instructions on the portableR 
web page link that you quoted. Do you have the directories referred to there in
place?
-- 
Sent from my phone. Please excuse my brevity.

On July 25, 2017 7:27:31 AM PDT, Ashish Ranjan <aranjan1645 at gmail.com>
wrote:
>Hi Jeff,
>
>1). I have tried install.packages( c("dplyr", "tidyr" )
) into the
>r-script
>file got below error:-
>
>> install.packages( c("dplyr", "tidyr" ) )
>Installing packages into
>?/tmp/1776492876238396447/lib/portableR-master/site-library?
>(as ?lib? is unspecified)
>Error in install.packages(c("dplyr", "tidyr")) :
>  This version of R is not set up to install source packages
>If it was installed from an RPM, you may need the R-devel RPM
>Execution halted
>
>2). I have also tried these steps in R-console (install.packages(
>c("dplyr", "tidyr" ) )), able to install these library
into linux based
>R
>machine. after that tried to copy the lib folder to my portable R site
>library folder got the various error but i have resolved many now
>getting
>below error which unable to resolve
>
>Error in dyn.load(file, DLLpath = DLLpath, ...) :
>  unable to load shared object
>'/tmp/3971881046757600243/lib/portableR-master/site-library/Rcpp/libs/Rcpp.so':
>/usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.20' not found (required
>by
>/tmp/3971881046757600243/lib/portableR-master/site-library/Rcpp/libs/Rcpp.so)
>Error: package or namespace load failed for ?dplyr?
>Execution halted
>
>
>Thanks
>Ashish Ranjan
>
>
>
>On Tue, Jul 25, 2017 at 7:09 PM, Jeff Newmiller
><jdnewmil at dcn.davis.ca.us>
>wrote:
>
>> 1) Definitely yes. They are on CRAN. Just type
>>
>> install.packages( c("dplyr", "tidyr" ) )
>>
>> at the R console.
>>
>> 2) Don't know, but most likely the answer is yes. Since all R
>packages on
>> Linux are compiled by R when installed, you either need to activate
>your
>> virtual machine, compile the packages, and save the state for future
>use,
>> or you have to build the package library on another compatible
>architecture
>> and copy the library into the VM image. I suggest you read the
>portableR
>> documentation and the R Installation and Administration manual.
>> --
>> Sent from my phone. Please excuse my brevity.
>>
>> On July 25, 2017 3:43:11 AM PDT, Ashish Ranjan
><aranjan1645 at gmail.com>
>> wrote:
>> >Hi Team,
>> >
>> >Please suggest me on below :-
>> >
>> >1).are There any linux based library for dplyr and tidyr? I could
>find
>> >these r-libraries for windows and Mac but not for linux. 2). is it
>> >possible
>> >to add external library to portableR
>> >zip(http://nafiux.github.io/portableR/)
>> >file if yes then how to add external library to poratbleR zip file?
>> >
>> >In our application AWS lambda invoking the R-script by using
>portableR
>> >zip
>> >file.we want to add new external dplyr library to this poratbleR
zip
>> >file.
>> >
>> >
>> >Thanks
>> >
>> >Ashish Ranjan
>> >
>> >       [[alternative HTML version deleted]]
>> >
>> >______________________________________________
>> >R-help at r-project.org mailing list -- To UNSUBSCRIBE and more,
see
>> >https://stat.ethz.ch/mailman/listinfo/r-help
>> >PLEASE do read the posting guide
>> >http://www.R-project.org/posting-guide.html
>> >and provide commented, minimal, self-contained, reproducible code.
>>