Aedin Culhane
2016-Jul-12 16:48 UTC
[R] use value in variable to be name of another variable
Hi Matt It looks like you are trying to obtain the upstream sequence data information given transcription factor binding sites??? There are a lot of functions in Bioconductor which are optimized for this type of analysis. If you wish to either post on the Bioconductor mailing list (https://support.bioconductor.org/), or tell me a little more, I can perhaps help. Also see http://bioconductor.org/help/search/index.html?q=transcription+factor+binding/. There are several workflows and lots of docs on TFBS analysis. Also Matt as you are local to Boston, I am happy to point you to local Boston resources if you are new to R/Bioconductor. Best Aedin -- Aedin Culhane --------------- Department of Biostatistics and Computational Biology,Dana-Farber Cancer Institute Department of Biostatistics, Harvard TH Chan School of Public Health email: aedin at jimmy.harvard.edu