Marine Regis
2016-Apr-28 17:57 UTC
[R] Snowfall - Error in checkForRemoteErrors(val) with sfClusterApplyLB()
Hello, I'm trying to run a code that uses the snowfall package. Here is the structure of my code. sfInit(parallel=T, cpus = 5, slaveOutfile="ErrorMessage.txt") sfExportAll() sfLibrary(rgdal) sfLibrary(raster) sfLibrary(sp) sfLibrary(rgeos) sfLibrary(snowfall) system.time( sfClusterApplyLB(1:10, function(k) { sfCat(paste("Iteration ", k), sep="\n") if (......) { } else { if (class(ob1)=="SpatialCollections") { ob2 <- ob1 at lineobj } else if (class(ob1)=="SpatialLines") { ob2 <- ob1 } ob3 <- data.frame(length_m=sapply(1:length(ob2), function(l) gLength(ob2 [l, ]))) ..... } ..... } sfStop() The problem is that the code returns the error message: Error in checkForRemoteErrors(val) : one node produced an error: object 'ob2' not found>From the debugging function "sfCat", I also get these warning messages:Warning messages: 1: In searchCommandline(parallel, cpus = cpus, type = type, socketHosts = socketHosts, : Unknown option on commandline: --file 2: In searchCommandline(parallel, cpus = cpus, type = type, socketHosts = socketHosts, : Unknown option on commandline: MASTER 3: In searchCommandline(parallel, cpus = cpus, type = type, socketHosts = socketHosts, : Unknown option on commandline: PORT 4: In searchCommandline(parallel, cpus = cpus, type = type, socketHosts = socketHosts, : Unknown option on commandline: OUT 5: In searchCommandline(parallel, cpus = cpus, type = type, socketHosts = socketHosts, : Unknown option on commandline: SNOWLIB socketHosts, : Unknown option on commandline: SNOWLIB tion on commandline: SNOWLIB The code works when I use a simple loop for(k in 1:10) {} instead of sfClusterApplyLB(1:10, function(k) {}. Why do I obtain this error message ? I am completely novice in using snowfall package. So any advices are appreciated. Thanks a lot for your time. Marine [[alternative HTML version deleted]]