R help - Mar 2016 - R problem : Error: protect(): protection stack overflow

Hi, 
i got an error while i am running a big data. Error has explained by the
following sample sample



## Load data 
mdata <-
as.matrix(read.table('https://gubox.box.com/shared/static/qh4spcxe2ba5ymzjs0ynh8n8s08af7m0.txt',
header = TRUE, check.names = FALSE, sep = '\t'))

## Install and load library 
source("https://bioconductor.org/biocLite.R") 
biocLite("impute") 
library(impute) 
 
## sets a limit on the number of nested expressions 
options(expressions = 500000)
## Apply k-nearest neighbors for missing value imputation 

res <-impute.knn(mdata) 

Error: protect(): protection stack overflow


If anybody has solution or suggestion, please share. 
Thanks . 

 
 
Tanvir Ahamed 
G?teborg, Sweden  |  mashranga at yahoo.com

On 03/14/2016 06:39 PM, Mohammad Tanvir Ahamed via R-help
wrote:
> Hi, i got an error while i am running a big data. Error has explained
> by the following sample sample
This is an error in the package, and should be reported to the 
maintainer. Discover the maintainer with the command

     maintainer("impute")

>
>
>
> ## Load data mdata <-
>
as.matrix(read.table('https://gubox.box.com/shared/static/qh4spcxe2ba5ymzjs0ynh8n8s08af7m0.txt',
> header = TRUE, check.names = FALSE, sep = '\t'))
>
> ## Install and load library
> source("https://bioconductor.org/biocLite.R")
biocLite("impute")
> library(impute)
>
> ## sets a limit on the number of nested expressions
> options(expressions = 500000) ## Apply k-nearest neighbors for
> missing value imputation
>
> res <-impute.knn(mdata)
>
> Error: protect(): protection stack overflow
>
>
> If anybody has solution or suggestion, please share. Thanks .
>
>
>
> Tanvir Ahamed G?teborg, Sweden  |  mashranga at yahoo.com
>
> ______________________________________________ R-help at r-project.org
> mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the
> posting guide http://www.R-project.org/posting-guide.html and provide
> commented, minimal, self-contained, reproducible code.
>

This email message may contain legally privileged and/or confidential
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Thanks . I have informed package maintainer. 
 Tanvir Ahamed 
G?teborg, Sweden   |  mashranga at yahoo.com 


----- Original Message -----
From: Martin Morgan <martin.morgan at roswellpark.org>
To: Mohammad Tanvir Ahamed <mashranga at yahoo.com>; R-help Mailing List
<r-help at r-project.org>
Sent: Tuesday, 15 March 2016, 13:26
Subject: Re: [R] R problem : Error: protect(): protection stack overflow



On 03/14/2016 06:39 PM, Mohammad Tanvir Ahamed via R-help
wrote:
> Hi, i got an error while i am running a big data. Error has explained
> by the following sample sample
This is an error in the package, and should be reported to the 
maintainer. Discover the maintainer with the command

     maintainer("impute")


>
>
>
> ## Load data mdata <-
>
as.matrix(read.table('https://gubox.box.com/shared/static/qh4spcxe2ba5ymzjs0ynh8n8s08af7m0.txt',
> header = TRUE, check.names = FALSE, sep = '\t'))
>
> ## Install and load library
> source("https://bioconductor.org/biocLite.R")
biocLite("impute")
> library(impute)
>
> ## sets a limit on the number of nested expressions
> options(expressions = 500000) ## Apply k-nearest neighbors for
> missing value imputation
>
> res <-impute.knn(mdata)
>
> Error: protect(): protection stack overflow
>
>
> If anybody has solution or suggestion, please share. Thanks .
>
>
>
> Tanvir Ahamed G?teborg, Sweden  |  mashranga at yahoo.com
>
> ______________________________________________ R-help at r-project.org
> mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the
> posting guide http://www.R-project.org/posting-guide.html and provide
> commented, minimal, self-contained, reproducible code.
>

This email message may contain legally privileged and/or confidential
information.  If you are not the intended recipient(s), or the employee or agent
responsible for the delivery of this message to the intended recipient(s), you
are hereby notified that any disclosure, copying, distribution, or use of this
email message is prohibited.  If you have received this message in error, please
notify the sender immediately by e-mail and delete this email message from your
computer. Thank you.