Berwin A Turlach
2020-Feb-08 08:27 UTC
[Rd] Development version of R fails tests and is not installed
G'day all, I have daily scripts running to install the patched version of the current R version and the development version of R on my linux box (Ubuntu 18.04.4 LTS). The last development version that was successfully compiled and installed was "R Under development (unstable) (2020-01-25 r77715)" on 27 January. Since then the script always fails as a regression test seems to fail. Specifically, in the tests/ subdirectory of my build directory I have a file reg-tests-1d.Rout.fail which ends with:> ## more than half of the above were rounded *down* in R <= 3.6.x > ## Some "wrong" test cases from CRAN packages (partly relying on wrong R <= 3.6.x behavior) > stopifnot(exprs = {+ all.equal(round(10.7775, digits=3), 10.778, tolerance = 1e-12) # even tol=0, was 10.777 + all.equal(round(12345 / 1000, 2), 12.35 , tolerance = 1e-12) # even tol=0, was 12.34 in Rd + all.equal(round(9.18665, 4), 9.1866, tolerance = 1e-12) # even tol=0, was 9.1867 + }) Error: round(10.7775, digits = 3) and 10.778 are not equal: Mean relative difference: 9.27902e-05 Execution halted This happens while the 32bit architecture is installed, which is a bit surprising as I get the following results for the last installed version of R's development version: R Under development (unstable) (2020-01-25 r77715) -- "Unsuffered Consequences" Copyright (C) 2020 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu/32 (32-bit) [...]> round(10.7775, digits=3)[1] 10.778 and R Under development (unstable) (2020-01-25 r77715) -- "Unsuffered Consequences" Copyright (C) 2020 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu/64 (64-bit) [...]> round(10.7775, digits=3)[1] 10.778 On the other hand, the R 3.6.2 version, that I mainly use at the moment, gives the following results: R version 3.6.2 (2019-12-12) -- "Dark and Stormy Night" Copyright (C) 2019 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu/32 (32-bit) [...]> round(10.7775, digits=3)[1] 10.777 and R version 3.6.2 (2019-12-12) -- "Dark and Stormy Night" Copyright (C) 2019 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu/64 (64-bit) [...]> round(10.7775, digits=3)[1] 10.777 So it seems as if the behaviour of round() has changed between R 3.6.2 and the development version. But I do not understand why this test all of a sudden failed if the results from the last successfully installed development version of R suggest that the test should be passed. Thanks in advance for any insight and tips. Cheers, Berwin
Hugh Parsonage
2020-Feb-08 10:12 UTC
[Rd] Development version of R fails tests and is not installed
The only observation I can make is that the change to round() was made in r77727 whereas your R-devel appears to be r77715 (so would not exhibit the fixed behaviour). My guess is that there was a perpetual installation failure after r77715 but that the test folder was still retrieved and used. On Sat, 8 Feb 2020 at 19:27, Berwin A Turlach <berwin.turlach at gmail.com> wrote:> > G'day all, > > I have daily scripts running to install the patched version of the > current R version and the development version of R on my linux box > (Ubuntu 18.04.4 LTS). > > The last development version that was successfully compiled and > installed was "R Under development (unstable) (2020-01-25 r77715)" on > 27 January. Since then the script always fails as a regression test > seems to fail. Specifically, in the tests/ subdirectory of my build > directory I have a file reg-tests-1d.Rout.fail which ends with: > > > ## more than half of the above were rounded *down* in R <= 3.6.x > > ## Some "wrong" test cases from CRAN packages (partly relying on wrong R <= 3.6.x behavior) > > stopifnot(exprs = { > + all.equal(round(10.7775, digits=3), 10.778, tolerance = 1e-12) # even tol=0, was 10.777 > + all.equal(round(12345 / 1000, 2), 12.35 , tolerance = 1e-12) # even tol=0, was 12.34 in Rd > + all.equal(round(9.18665, 4), 9.1866, tolerance = 1e-12) # even tol=0, was 9.1867 > + }) > Error: round(10.7775, digits = 3) and 10.778 are not equal: > Mean relative difference: 9.27902e-05 > Execution halted > > This happens while the 32bit architecture is installed, which is a bit > surprising as I get the following results for the last installed > version of R's development version: > > R Under development (unstable) (2020-01-25 r77715) -- "Unsuffered Consequences" > Copyright (C) 2020 The R Foundation for Statistical Computing > Platform: x86_64-pc-linux-gnu/32 (32-bit) > [...] > > round(10.7775, digits=3) > [1] 10.778 > > and > > R Under development (unstable) (2020-01-25 r77715) -- "Unsuffered Consequences" > Copyright (C) 2020 The R Foundation for Statistical Computing > Platform: x86_64-pc-linux-gnu/64 (64-bit) > [...] > > round(10.7775, digits=3) > [1] 10.778 > > > On the other hand, the R 3.6.2 version, that I mainly use at the moment, > gives the following results: > > R version 3.6.2 (2019-12-12) -- "Dark and Stormy Night" > Copyright (C) 2019 The R Foundation for Statistical Computing > Platform: x86_64-pc-linux-gnu/32 (32-bit) > [...] > > round(10.7775, digits=3) > [1] 10.777 > > and > > R version 3.6.2 (2019-12-12) -- "Dark and Stormy Night" > Copyright (C) 2019 The R Foundation for Statistical Computing > Platform: x86_64-pc-linux-gnu/64 (64-bit) > [...] > > round(10.7775, digits=3) > [1] 10.777 > > > So it seems as if the behaviour of round() has changed between R 3.6.2 > and the development version. But I do not understand why this test all > of a sudden failed if the results from the last successfully installed > development version of R suggest that the test should be passed. > > Thanks in advance for any insight and tips. > > Cheers, > > Berwin > > ______________________________________________ > R-devel at r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel
Martin Maechler
2020-Feb-08 17:02 UTC
[Rd] round(x, dig) [was "Development version of R fails tests .."]
>>>>> Hugh Parsonage >>>>> on Sat, 8 Feb 2020 21:12:43 +1100 writes:> The only observation I can make is that the change to > round() was made in r77727 whereas your R-devel appears to > be r77715 (so would not exhibit the fixed behaviour). My > guess is that there was a perpetual installation failure > after r77715 but that the test folder was still retrieved > and used. > On Sat, 8 Feb 2020 at 19:27, Berwin A Turlach <berwin.turlach at gmail.com> wrote: >> >> G'day all, >> >> I have daily scripts running to install the patched version of the >> current R version and the development version of R on my linux box >> (Ubuntu 18.04.4 LTS). >> >> The last development version that was successfully compiled and >> installed was "R Under development (unstable) (2020-01-25 r77715)" on >> 27 January. Since then the script always fails as a regression test >> seems to fail. Specifically, in the tests/ subdirectory of my build >> directory I have a file reg-tests-1d.Rout.fail which ends with: >> >> > ## more than half of the above were rounded *down* in R <= 3.6.x >> > ## Some "wrong" test cases from CRAN packages (partly relying on wrong R <= 3.6.x behavior) >> > stopifnot(exprs = { >> + all.equal(round(10.7775, digits=3), 10.778, tolerance = 1e-12) # even tol=0, was 10.777 >> + all.equal(round(12345 / 1000, 2), 12.35 , tolerance = 1e-12) # even tol=0, was 12.34 in Rd >> + all.equal(round(9.18665, 4), 9.1866, tolerance = 1e-12) # even tol=0, was 9.1867 >> + }) >> Error: round(10.7775, digits = 3) and 10.778 are not equal: >> Mean relative difference: 9.27902e-05 >> Execution halted >> >> This happens while the 32bit architecture is installed, which is a bit >> surprising as I get the following results for the last installed >> version of R's development version: >> >> R Under development (unstable) (2020-01-25 r77715) -- "Unsuffered Consequences" >> Copyright (C) 2020 The R Foundation for Statistical Computing >> Platform: x86_64-pc-linux-gnu/32 (32-bit) >> [...] >> > round(10.7775, digits=3) >> [1] 10.778 >> >> and >> >> R Under development (unstable) (2020-01-25 r77715) -- "Unsuffered Consequences" >> Copyright (C) 2020 The R Foundation for Statistical Computing >> Platform: x86_64-pc-linux-gnu/64 (64-bit) >> [...] >> > round(10.7775, digits=3) >> [1] 10.778 >> >> >> On the other hand, the R 3.6.2 version, that I mainly use at the moment, >> gives the following results: >> >> R version 3.6.2 (2019-12-12) -- "Dark and Stormy Night" >> Copyright (C) 2019 The R Foundation for Statistical Computing >> Platform: x86_64-pc-linux-gnu/32 (32-bit) >> [...] >> > round(10.7775, digits=3) >> [1] 10.777 >> >> and >> >> R version 3.6.2 (2019-12-12) -- "Dark and Stormy Night" >> Copyright (C) 2019 The R Foundation for Statistical Computing >> Platform: x86_64-pc-linux-gnu/64 (64-bit) >> [...] >> > round(10.7775, digits=3) >> [1] 10.777 >> >> >> So it seems as if the behaviour of round() has changed between R 3.6.2 >> and the development version. But I do not understand why this test all >> of a sudden failed if the results from the last successfully installed >> development version of R suggest that the test should be passed. >> >> Thanks in advance for any insight and tips. >> >> Cheers, >> Berwin Note that r77727 was the last of a few commits I made related to dealing with R's bug report PR#17668: https://bugs.r-project.org/bugzilla/show_bug.cgi?id=17668 which itself triggered an involved dialogue, mostly online, visible at the PR's URL above. It lead me to also write an R package 'round' (in order to compare R 3.6.x and later's round() versions, comparing them etc) with a (not entirely polished) package vignette that explains how rounding to decimal digits is not at all trivial and why and how I ended (*) improving R's round(x, digits) algorithm in R-devel. The CRAN version of the package https://cran.r-project.org/package=round install.packages("round") is not quite current, notably its vignette isn't and so I have mentioned in the above thread ( https://bugs.r-project.org/bugzilla/show_bug.cgi?id=17668#c8 ) that the latest version of the vignette is also available as https://stat.ethz.ch/~maechler/R/Rounding.html You can install and load the devel version of 'round' by remotes::install_gitlab("mmaechler/round") require("round") and then look a bit at the different versions of round(.) using example(roundX) i.e. using round::roundX(x, digits, version) For those who read so far: I'm really interested in getting critical (constructive) feedback and comments about what I've written there (in the bugzilla report, and the package vignette). It seems almost nobody till now has had much interest and time to delve into the somewhat intriguing issues. Best regards, Martin Maechler ETH Zurich and R Core team
Jeroen Ooms
2020-Feb-09 00:04 UTC
[Rd] Development version of R fails tests and is not installed
On Sat, Feb 8, 2020 at 9:27 AM Berwin A Turlach <berwin.turlach at gmail.com> wrote:> > G'day all, > > I have daily scripts running to install the patched version of the > current R version and the development version of R on my linux box > (Ubuntu 18.04.4 LTS). > > The last development version that was successfully compiled and > installed was "R Under development (unstable) (2020-01-25 r77715)" on > 27 January. Since then the script always fails as a regression test > seems to fail. Specifically, in the tests/ subdirectory of my build > directory I have a file reg-tests-1d.Rout.fail which ends with: > > > ## more than half of the above were rounded *down* in R <= 3.6.x > > ## Some "wrong" test cases from CRAN packages (partly relying on wrong R <= 3.6.x behavior) > > stopifnot(exprs = { > + all.equal(round(10.7775, digits=3), 10.778, tolerance = 1e-12) # even tol=0, was 10.777 > + all.equal(round(12345 / 1000, 2), 12.35 , tolerance = 1e-12) # even tol=0, was 12.34 in Rd > + all.equal(round(9.18665, 4), 9.1866, tolerance = 1e-12) # even tol=0, was 9.1867 > + }) > Error: round(10.7775, digits = 3) and 10.778 are not equal: > Mean relative difference: 9.27902e-05 > Execution halted > > This happens while the 32bit architecture is installed, which is a bit > surprising as I get the following results for the last installed > version of R's development versionThere are two independent, but slightly related issues here: First, as Martin already explained, the round() function was recently improved, and some very strict tests were added to confirm the new behavior. That explains why you see different round() results in R 4.0 from R 3.6.2. The bugzilla thread explains why: https://bugs.r-project.org/bugzilla/show_bug.cgi?id=17668 The second issue has to do with numeric precision on 32-bit systems, which is why I think you are getting this error. We ran into the same problem on Windows where results on 32-bit are slightly off, including (but not limited to) edge-cases in rounding. This has always been the case, but the 32-bit inaccuracies have increased for recent versions of GCC. In general, the main difference in float precision between i686 and x86_64 could come from whether it uses x87 (with 80 bit floats as intermediates, as long as all intermediates are stored in registers) or sse2 for general math. Depending on what the tests do, you can get test failures (i.e. different results) if intermediates use different precision, if the test reference is calculated assuming rounding all intermediates to a certain length between each step. The solution: to get the same results on 32-bit as on 64-bit, you need to build R with these extra gcc flags: -mfpmath=sse -msse2. As explained in https://gcc.gnu.org/onlinedocs/gcc-8.3.0/gcc/x86-Options.html#x86-Options the -mfpmath=sse is the default for x86-64 but not for i686. As of r77719 we have made sse the default on Windows and now we get consistent results on 32-bit and 64-bit, including the round() edge cases. I think the intention was to add something similar in R's autoconf script to enable sse on 32-bit unix systems, but seemingly this hasn't happened. For now I think you should be able to make your 32-bit checks succeed if you build R with CFLAGS=-mfpmath=sse -msse2.
Berwin A Turlach
2020-Feb-16 09:53 UTC
[Rd] Development version of R fails tests and is not installed
G'day Jeroen, On Sun, 9 Feb 2020 01:04:24 +0100 Jeroen Ooms <jeroen at berkeley.edu> wrote:> I think the intention was to add something similar in R's autoconf > script to enable sse on 32-bit unix systems, but seemingly this hasn't > happened. For now I think you should be able to make your 32-bit > checks succeed if you build R with CFLAGS=-mfpmath=sse -msse2.Just for the record, adding CFLAGS="-mfpmath=sse -msse2" to the config.site file used to compile the 32bit version of R's development version fixed the problem indeed. The installation script ran from the command line with out error to the end, and every day since then at this crontab'd time. Looks as if it would be good indeed if R's autoconf script would enable sse on 32-bit unix systems. :) Thank you for the solution. Cheers, Berwin
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