R 3.0.2 has some changes to work (or work better) with current versions of LaTeX style files: this can cause problems for those with older versions. So the main message is to update your TeX system: all of TeXLive 2013, MacTeX 2013 and MiKTeX 2.9 work as expected if up-to-date. 1) In around June the inconsolata package was changed, a lot, and changed again in July. For older versions things appear to work but it has been reported recently that in some cases single quotes are silently omitted from the PDF file. To work around this incompatibility, update the inconsolata package. If you cannot do that for your LaTeX distribution, you should be able to do so for your own account: - download the current package from http://mirrors.ctan.org/systems/texlive/tlnet/archive/inconsolata.tar.xz - locate your personal texmf directory by kpsewhich -var-value=TEXMFHOME usually ~/texmf (and it may need to be created) and cd there. - install the current version by something like tar xf inconsolata.tar.xz or use untar('inconsolata.tar.xz') in R; (if there is an ls-R file in that directory, run mktexlsr . ) then updmap --enable Map=zi4.map Alternatively, set environment variable R_RD4PDF to an option such as times,beramono,hyper or times,hyper . See http://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Making-the-manuals 2) R used to contain a very old upquote.sty file, but this has been removed. If you have LaTeX style files which refer to upquote.sty or use it directly in your package, you may need to remove the usage as some recent versions conflict with the ae fonts (the default for Sweave). In particular, remove any old copies of Sweave.sty. -- Brian D. Ripley, ripley at stats.ox.ac.uk Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UK Fax: +44 1865 272595