R devel - Jun 2012 - Build fails with sysdata.rda in R dir

Hi, 

I am getting a strange error with 15.0 which I've not seen with previous
versions of R.

If sysdata.rda is included in R directory of the package I am getting:

R CMD build betfairly.roxygen/
* checking for file ?betfairly.roxygen/DESCRIPTION? ... OK
* preparing ?betfairly?:
* checking DESCRIPTION meta-information ... OK
* excluding invalid files
Subdirectory 'R' contains invalid file names:
  ?getMarketTradedVolume.Rd? ?sfdsfsd?
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
Removed empty directory ?betfairly/inst/doc?
* looking to see if a ?data/datalist? file should be added
Error in if (any(update)) { : missing value where TRUE/FALSE needed
Execution halted


If I remove the data everything is fine:

@~/works/betfair$ rm betfairly.roxygen/R/sysdata.rda 
@~/works/betfair$ R CMD build betfairly.roxygen/
* checking for file ?betfairly.roxygen/DESCRIPTION? ... OK
* preparing ?betfairly?:
* checking DESCRIPTION meta-information ... OK
* excluding invalid files
Subdirectory 'R' contains invalid file names:
  ?getMarketTradedVolume.Rd? ?sfdsfsd?
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
Removed empty directory ?betfairly/inst/doc?
* building ?betfairly_1.2.1.tar.gz?


If I manually adding sysdata.rda after build then checks run ok.

Vitalie.

R version 2.15.0 (2012-03-30)
Copyright (C) 2012 The R Foundation for Statistical Computing
ISBN 3-900051-07-0
Platform: i686-pc-linux-gnu (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under the terms of the
GNU General Public License versions 2 or 3.
For more information about these matters see
http://www.gnu.org/licenses/.

I had the same issue.

Try:
R CMD BUILD --resave-data="best" package

This worked for me.  The issue seems to be in the reserving functions, 
but I'm not sure where.

HTH

Alastair

On 15.06.2012 16:37, Vitalie Spinu wrote:
>
> Hi,
>
> I am getting a strange error with 15.0 which I've not seen with
previous
> versions of R.
>
> If sysdata.rda is included in R directory of the package I am getting:
>
> R CMD build betfairly.roxygen/
> * checking for file ?betfairly.roxygen/DESCRIPTION? ... OK
> * preparing ?betfairly?:
> * checking DESCRIPTION meta-information ... OK
> * excluding invalid files
> Subdirectory 'R' contains invalid file names:
>    ?getMarketTradedVolume.Rd? ?sfdsfsd?
> * checking for LF line-endings in source and make files
> * checking for empty or unneeded directories
> Removed empty directory ?betfairly/inst/doc?
> * looking to see if a ?data/datalist? file should be added
> Error in if (any(update)) { : missing value where TRUE/FALSE needed
> Execution halted
>
>
> If I remove the data everything is fine:
>
> @~/works/betfair$ rm betfairly.roxygen/R/sysdata.rda
> @~/works/betfair$ R CMD build betfairly.roxygen/
> * checking for file ?betfairly.roxygen/DESCRIPTION? ... OK
> * preparing ?betfairly?:
> * checking DESCRIPTION meta-information ... OK
> * excluding invalid files
> Subdirectory 'R' contains invalid file names:
>    ?getMarketTradedVolume.Rd? ?sfdsfsd?
> * checking for LF line-endings in source and make files
> * checking for empty or unneeded directories
> Removed empty directory ?betfairly/inst/doc?
> * building ?betfairly_1.2.1.tar.gz?
>
>
> If I manually adding sysdata.rda after build then checks run ok.

Hmmm, and how have you added it before? Can you send us an example how 
to create an sysdata.rda that causes R to fail? If this is done vy 
roxygen, please ask the roxygen maintainers. If plainR, I am happy to 
look into it.

Best,
Uwe Ligges


> Vitalie.
>
> R version 2.15.0 (2012-03-30)
> Copyright (C) 2012 The R Foundation for Statistical Computing
> ISBN 3-900051-07-0
> Platform: i686-pc-linux-gnu (32-bit)
>
> R is free software and comes with ABSOLUTELY NO WARRANTY.
> You are welcome to redistribute it under the terms of the
> GNU General Public License versions 2 or 3.
> For more information about these matters see
> http://www.gnu.org/licenses/.
>
> ______________________________________________
> R-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-devel
>