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Jeff Hamann

2012-Jan-11 22:33 UTC

[Rd] R CMD check pkg and 32/64 bit.

R gurus:

I'm trying to get another round of rconifers out and I need some advice/help
crushing differences in the examples test.

I'm trying to make sure the max sdi values are being respected.

I've added a tests/rconifers-Ex.Rout.save (from windows i386-pc-mingw32) and
when I ran R CMD check (both R-2.13.0), I got the following results:

* using log directory 'c:/conifers/trunk/rconifers.Rcheck'
* using R version 2.13.0 (2011-04-13)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* checking for file 'rconifers/DESCRIPTION' ... OK
* this is package 'rconifers' version '1.0.7'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking for executable files ... OK
* checking whether package 'rconifers' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... WARNING
Found the following sources/headers with CR or CRLF line endings:
  src/coeffs_cips.c
  src/coeffs_mgt.c
  src/coeffs_smc.c
  src/coeffs_swo.c
  src/coeffs_swohybrid.c
  src/conifers.h
  src/file_io.c
  src/grow.c
  src/model_cips.c
  src/model_smc.c
  src/model_swo.c
  src/model_swohybrid.c
  src/mortality.c
  src/plot.c
  src/rconifers.c
  src/stats.c
  src/thin.c
Some Unix compilers require LF line endings.
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking differences from 'rconifers-Ex.Rout' to
'rconifers-Ex.Rout.save' ... OK
* checking PDF version of manual ... OK
WARNING: There was 1 warning, see
  'c:/conifers/trunk/rconifers.Rcheck/00check.log'
for details

The magic line is:

* checking differences from 'rconifers-Ex.Rout' to
'rconifers-Ex.Rout.save' ... OK

which tells me that the check file matched the expected file.



When I ran the check under OSX and got the following results:

macbook:Desktop hamannjd$ R CMD check rconifers
* using log directory ‘/Users/hamannjd/Desktop/rconifers.Rcheck’
* using R version 2.13.0 (2011-04-13)
* using platform: x86_64-apple-darwin10.7.0 (64-bit)
* using session charset: UTF-8
* checking for file ‘rconifers/DESCRIPTION’ ... OK
* this is package ‘rconifers’ version ‘1.0.7’
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking for executable files ... OK
* checking whether package ‘rconifers’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking differences from ‘rconifers-Ex.Rout’ to ‘rconifers-Ex.Rout.save’ ...
0a1> > options(pager = "console")377,383c378,384
< 1    1      DF 2.08 0.61  7.08 0.845       1  100        4.40      0
< 2    1      PP 4.80 2.91 11.50 0.852       1  100        7.55      0
< 3    2      IC 0.60 0.00  1.70 0.706       1  100        1.17      0
< 4    2      PP 0.51 0.00  1.34 0.478       1  100        1.37      0
< 5    2      IC 0.50 0.00  1.06 0.623       1  100        0.98      0
< 6    2      IC 0.34 0.00  0.76 0.474       1  100        0.60      0
< 7    2      IC 0.17 0.00  0.58 0.310       1  100        0.29      0
---> 1    1      DF  2.08  0.61  7.08 0.845       1 100.00    4.400000      0
> 2    1      PP  4.80  2.91 11.50 0.852       1 100.00    7.550000      0
> 3    2      WF 49.00 35.20 77.96 0.368       1   2.96   30.152669      0
> 4    2      PP  2.43  1.10  6.28 0.705       1 100.00    3.773147      0
> 5    2    COCO  0.49  0.00  3.90 1.000      18 100.00    2.360064      0
> 6    2      DF  1.06  0.00  3.88 0.794       1 100.00    2.973220      0
> 7    2      IC  0.60  0.00  1.70 0.706       1 100.00    1.170000      02076c2077
< max sdi =  400.955 
---> max sdi =  400.222 2078,2084c2079,2085
< CEIN  0.000000  8.57557  0.000000 250.00 250.00
< COCO  0.000000 10.65750  0.000000 825.00 825.00
< DF    3.871848 32.37521 34.749737 425.00 425.00
< IC    0.680329  7.94603  0.757329 300.00 500.00
< PM    4.882285 33.89248 84.505614 650.00 650.00
< PP   10.747477 42.37973 62.999774 100.00 100.00
< WF    1.961988  7.49918  5.264321 250.74 275.74
---> CEIN  0.000000  8.83025  0.00000 250.00 250.00
> COCO  0.000000 10.52370  0.00000 825.00 825.00
> DF    3.380206 28.96161 26.48507 425.00 425.00
> IC    0.997025  8.10528  1.49098 275.00 500.00
> PM    5.036259 34.20425 89.91983 650.00 650.00
> PP   10.505312 41.18743 60.19271 100.00 100.00
> WF    2.089732  7.81061  5.37670 225.74 275.742094c2095
< max sdi =  400.955 
---> max sdi =  400.222 2096,2102c2097,2103
< CEIN  0.000000  8.57557  0.000000 250.00 250.00
< COCO  0.000000 10.65750  0.000000 825.00 825.00
< DF    3.871848 32.37521 34.749737 425.00 425.00
< IC    0.680329  7.94603  0.757329 300.00 500.00
< PM    4.882285 33.89248 84.505614 650.00 650.00
< PP   10.747477 42.37973 62.999774 100.00 100.00
< WF    1.961988  7.49918  5.264321 250.74 275.74
---> CEIN  0.000000  8.83025  0.00000 250.00 250.00
> COCO  0.000000 10.52370  0.00000 825.00 825.00
> DF    3.380206 28.96161 26.48507 425.00 425.00
> IC    0.997025  8.10528  1.49098 275.00 500.00
> PM    5.036259 34.20425 89.91983 650.00 650.00
> PP   10.505312 41.18743 60.19271 100.00 100.00
> WF    2.089732  7.81061  5.37670 225.74 275.742513c2514
< max sdi =  398.99 
---> max sdi =  398.321 2515,2521c2516,2522
< CEIN  0.00000  8.74666  0.000000 250.00 250.00
< COCO  0.00000 10.60946  0.000000 825.00 825.00
< DF    3.17032 28.17772 23.298195 425.00 425.00
< IC    1.02363  6.08777  0.857239 150.00 500.00
< PM    5.02216 33.93141 89.417000 650.00 650.00
< PP   10.53209 40.19664 60.500008 100.00 100.00
< WF    2.52830  5.38780  5.255483 150.74 275.74
---> CEIN  0.00000  8.73566  0.000000 250.00 250.00
> COCO  0.00000 10.60959  0.000000 825.00 825.00
> DF    3.11552 27.87012 22.499678 425.00 425.00
> IC    1.02147  6.04613  0.853626 150.00 500.00
> PM    5.01949 33.92538 89.322114 650.00 650.00
> PP   10.60861 40.42145 61.382237 100.00 100.00
> WF    2.52834  5.37677  5.255645 150.74 275.742535c2536
< max sdi =  392.682 
---> max sdi =  392.183 2537,2543c2538,2544
< CEIN  0.00000  8.74666  0.000000 250.0000 250.0000
< COCO  0.00000 10.60946  0.000000 825.0000 825.0000
< DF    6.12078 42.83671 10.413135  50.9615  50.9615
< IC    1.02363  6.08777  0.857239 150.0000 500.0000
< PM    5.02216 33.93141 89.417000 650.0000 650.0000
< PP   10.53209 40.19664 60.500008 100.0000 100.0000
< WF    2.52830  5.38780  5.255483 150.7400 275.7400
---> CEIN  0.00000  8.73566  0.000000 250.0000 250.0000
> COCO  0.00000 10.60959  0.000000 825.0000 825.0000
> DF    6.01295 42.00488 10.049466  50.9615  50.9615
> IC    1.02147  6.04613  0.853626 150.0000 500.0000
> PM    5.01949 33.92538 89.322114 650.0000 650.0000
> PP   10.60861 40.42145 61.382237 100.0000 100.0000
> WF    2.52834  5.37677  5.255645 150.7400 275.74002555c2556
< max sdi =  390.319 
---> max sdi =  389.507 2557,2563c2558,2564
< CEIN  0.00000  8.74666 0.0000000 250.00000 250.00000
< COCO  0.00000 10.60946 0.0000000 825.00000 825.00000
< DF    6.25984 44.26174 3.2535039  15.22296  15.22296
< IC    1.20533 11.86522 0.0609674   7.69418  11.76394
< PM    4.85482 33.74425 2.0646472  16.06105  16.06105
< PP   11.23175 42.87801 8.8974623  12.93139  12.93139
< WF    3.77143  6.55036 0.3592728   4.63112   6.08461
---> CEIN  0.00000  8.73566 0.0000000 250.00000 250.00000
> COCO  0.00000 10.60959 0.0000000 825.00000 825.00000
> DF    6.15956 43.58377 3.1501027  15.22296  15.22296
> IC    1.20280 11.77230 0.0607118   7.69418  11.76394
> PM    4.84104 33.71376 2.0529479  16.06105  16.06105
> PP   11.34546 43.47322 9.0785299  12.93139  12.93139
> WF    3.77112  6.46029 0.3592136   4.63112   6.084612575c2576
< max sdi =  380.439 
---> max sdi =  380.211 2577,2578c2578,2579
< CEIN  0.00000  8.74666  0.00000 250.00 250.00
< COCO  0.00000 10.60946  0.00000 825.00 825.00
---> CEIN  0.00000  8.73566  0.00000 250.00 250.00
> COCO  0.00000 10.60959  0.00000 825.00 825.002581,2583c2582,2584
< PM    5.44998 35.20515 12.15001  75.00  75.00
< PP   11.68521 44.09759 28.47847  38.24  38.24
< WF   35.20006 78.07609  5.00086   0.74   0.74
---> PM    5.45033 35.20515 12.15159  75.00  75.00
> PP   11.79190 44.68573 29.00089  38.24  38.24
> WF   35.20006 78.07794  5.00086   0.74   0.742595c2596
< max sdi =  392.617 
---> max sdi =  391.885 2597,2603c2598,2604
< CEIN  0.00000  8.74666  0.000000 250.00 250.00
< COCO  0.00000 10.60946  0.000000 825.00 825.00
< DF    3.17032 28.17772 23.298195 425.00 425.00
< IC    1.02363  6.08777  0.857239 150.00 500.00
< PM    5.21231 34.66273 16.670145 112.50 112.50
< PP   10.53209 40.19664 60.500008 100.00 100.00
< WF    2.52830  5.38780  5.255483 150.74 275.74
---> CEIN  0.00000  8.73566  0.000000 250.00 250.00
> COCO  0.00000 10.60959  0.000000 825.00 825.00
> DF    3.11552 27.87012 22.499678 425.00 425.00
> IC    1.02147  6.04613  0.853626 150.00 500.00
> PM    5.20525 34.64531 16.624992 112.50 112.50
> PP   10.60861 40.42145 61.382237 100.00 100.00
> WF    2.52834  5.37677  5.255645 150.74 275.743543,3544c3544,3545
< x0 =  6.83298 
< max sdi =  398.507 
---> x0 =  6.83124 
> max sdi =  398.773 3546,3552c3547,3553
< CEIN  0.00000  8.76683  0.000000 250.0000 250.0000
< COCO  0.00000 10.60933  0.000000 825.0000 825.0000
< DF    3.14048 27.68502 21.449519 398.7488 398.7488
< IC    1.01997  6.15100  0.798552 140.7349 469.1162
< PM    5.02023 33.92625 83.829537 609.8511 609.8511
< PP   10.60746 40.60003 57.578321  93.8232  93.8232
< WF    2.53410  5.48953  4.953497 141.4292 258.7082
---> CEIN  0.00000  8.74366  0.00000 250.0000 250.0000
> COCO  0.00000 10.61129  0.00000 825.0000 825.0000
> DF    3.16517 28.02873 21.78805 398.7488 398.7488
> IC    1.00100  6.04754  0.76913 140.7349 469.1162
> PM    5.01960 33.92487 83.80863 609.8511 609.8511
> PP   10.57284 40.39489 57.20315  93.8232  93.8232
> WF    2.53248  5.45694  4.94718 141.4292 258.70823565,3566c3566,3567
< x0 =  6.83298 
< max sdi =  392.685 
---> x0 =  6.83124 
> max sdi =  392.866 3568,3574c3569,3575
< CEIN  0.00000  8.76683  0.000000 250.0000 250.0000
< COCO  0.00000 10.60933  0.000000 825.0000 825.0000
< DF    6.06366 42.37577 10.219698  50.9615  50.9615
< IC    1.01997  6.15100  0.798552 140.7349 469.1162
< PM    5.02023 33.92625 83.829537 609.8511 609.8511
< PP   10.60746 40.60003 57.578321  93.8232  93.8232
< WF    2.53410  5.48953  4.953497 141.4292 258.7082
---> CEIN  0.00000  8.74366  0.00000 250.0000 250.0000
> COCO  0.00000 10.61129  0.00000 825.0000 825.0000
> DF    6.10480 42.74745 10.35884  50.9615  50.9615
> IC    1.00100  6.04754  0.76913 140.7349 469.1162
> PM    5.01960 33.92487 83.80863 609.8511 609.8511
> PP   10.57284 40.39489 57.20315  93.8232  93.8232
> WF    2.53248  5.45694  4.94718 141.4292 258.70823586,3587c3587,3588
< x0 =  6.83298 
< max sdi =  389.955 
---> x0 =  6.83124 
> max sdi =  390.023 3589,3595c3590,3596
< CEIN  0.00000  8.76683 0.0000000 250.00000 250.00000
< COCO  0.00000 10.60933 0.0000000 825.00000 825.00000
< DF    6.22626 44.06074 3.2186911  15.22296  15.22296
< IC    1.20102 12.07219 0.0605327   7.69418  11.76394
< PM    4.84437 33.71814 2.0557684  16.06105  16.06105
< PP   11.29807 43.23521 9.0028449  12.93139  12.93139
< WF    3.77756  6.95055 0.3604408   4.63112   6.08461
---> CEIN  0.00000  8.74366 0.0000000 250.00000 250.00000
> COCO  0.00000 10.61129 0.0000000 825.00000 825.00000
> DF    6.24021 44.22627 3.2331328  15.22296  15.22296
> IC    1.17869 11.77423 0.0583023   7.69418  11.76394
> PM    4.84002 33.71119 2.0520768  16.06105  16.06105
> PP   11.28971 43.23397 8.9895303  12.93139  12.93139
> WF    3.77333  6.65046 0.3596351   4.63112   6.084613607,3608c3608,3609
< x0 =  6.83298 
< max sdi =  380.894 
---> x0 =  6.83124 
> max sdi =  380.956 3610,3611c3611,3612
< CEIN  0.0000  8.76683  0.00000 250.000000 250.000000
< COCO  0.0000 10.60933  0.00000 825.000000 825.000000
---> CEIN  0.00000  8.74366  0.00000 250.000000 250.000000
> COCO  0.00000 10.61129  0.00000 825.000000 825.0000003614,3616c3615,3617
< PM    5.4510 35.20515 10.65304  65.734863  65.734863
< PP   11.7561 44.51895 25.29875  33.561724  33.561724
< WF   35.2001 78.07525  4.69197   0.694292   0.694292
---> PM    5.44942 35.20515 10.64688  65.734863  65.734863
> PP   11.72679 44.43688 25.17262  33.561724  33.561724
> WF   35.20006 78.07609  4.69197   0.694292   0.6942923627,3628c3628,3629
< x0 =  6.83298 
< max sdi =  392.251 
---> x0 =  6.83124 
> max sdi =  392.539 3630,3636c3631,3637
< CEIN  0.00000  8.76683  0.000000 250.0000 250.0000
< COCO  0.00000 10.60933  0.000000 825.0000 825.0000
< DF    3.14048 27.68502 21.449519 398.7488 398.7488
< IC    1.01997  6.15100  0.798552 140.7349 469.1162
< PM    5.20745 34.64782 16.639048 112.5000 112.5000
< PP   10.60746 40.60003 57.578321  93.8232  93.8232
< WF    2.53410  5.48953  4.953497 141.4292 258.7082
---> CEIN  0.00000  8.74366  0.00000 250.0000 250.0000
> COCO  0.00000 10.61129  0.00000 825.0000 825.0000
> DF    3.16517 28.02873 21.78805 398.7488 398.7488
> IC    1.00100  6.04754  0.76913 140.7349 469.1162
> PM    5.20398 34.64385 16.61688 112.5000 112.5000
> PP   10.57284 40.39489 57.20315  93.8232  93.8232
> WF    2.53248  5.45694  4.94718 141.4292 258.70823645c3646
< PM   0.1872181 0.7215733 -67.19049 -497.3511 -497.3511
---> PM   0.1843748 0.7189766 -67.19175 -497.3511 -497.35114375c4376
< max sdi =  398.846 
---> max sdi =  398.41 4377,4383c4378,4384
< CEIN  0.00000  8.77646  0.00000 250.00 250.00
< COCO  0.00000 10.60993  0.00000 825.00 825.00
< DF    3.13603 27.61661 22.79684 425.00 425.00
< IC    1.04211  6.09452  0.88848 150.00 500.00
< PM    5.02090 33.92971 89.37223 650.00 650.00
< PP   10.51368 40.06350 60.28859 100.00 100.00
< WF    2.52873  5.30578  5.25726 150.74 275.74
---> CEIN  0.00000  8.77723  0.000000 250.00 250.00
> COCO  0.00000 10.61171  0.000000 825.00 825.00
> DF    3.14884 27.68445 22.983527 425.00 425.00
> IC    1.00402  6.06886  0.824718 150.00 500.00
> PM    5.01909 33.92520 89.307792 650.00 650.00
> PP   10.64086 41.03086 61.755992 100.00 100.00
> WF    2.53101  5.46218  5.266755 150.74 275.744403c4404
< max sdi =  392.643 
---> max sdi =  392.207 4405,4411c4406,4412
< CEIN  0.00000  8.77646  0.00000 250.0000 250.0000
< COCO  0.00000 10.60993  0.00000 825.0000 825.0000
< DF    6.06295 42.12905 10.21732  50.9615  50.9615
< IC    1.04211  6.09452  0.88848 150.0000 500.0000
< PM    5.02090 33.92971 89.37223 650.0000 650.0000
< PP   10.51368 40.06350 60.28859 100.0000 100.0000
< WF    2.52873  5.30578  5.25726 150.7400 275.7400
---> CEIN  0.00000  8.77723  0.000000 250.0000 250.0000
> COCO  0.00000 10.61171  0.000000 825.0000 825.0000
> DF    6.09105 42.58754 10.312236  50.9615  50.9615
> IC    1.00402  6.06886  0.824718 150.0000 500.0000
> PM    5.01909 33.92520 89.307792 650.0000 650.0000
> PP   10.64086 41.03086 61.755992 100.0000 100.0000
> WF    2.53101  5.46218  5.266755 150.7400 275.74004423c4424
< max sdi =  389.885 
---> max sdi =  389.775 4425,4431c4426,4432
< CEIN  0.00000  8.77646 0.0000000 250.00000 250.00000
< COCO  0.00000 10.60993 0.0000000 825.00000 825.00000
< DF    6.16773 43.35916 3.1584660  15.22296  15.22296
< IC    1.22710 11.95206 0.0631897   7.69418  11.76394
< PM    4.84963 33.73568 2.0602370  16.06105  16.06105
< PP   11.24155 42.89267 8.9129985  12.93139  12.93139
< WF    3.76924  6.14318 0.3588566   4.63112   6.08461
---> CEIN  0.00000  8.77723 0.0000000 250.00000 250.00000
> COCO  0.00000 10.61171 0.0000000 825.00000 825.00000
> DF    6.23059 44.06992 3.2231765  15.22296  15.22296
> IC    1.18225 11.84774 0.0586553   7.69418  11.76394
> PM    4.84046 33.71283 2.0524548  16.06105  16.06105
> PP   11.35786 43.84667 9.0983840  12.93139  12.93139
> WF    3.77715  6.98331 0.3603637   4.63112   6.084614443c4444
< max sdi =  380.596 
---> max sdi =  380.196 4445,4446c4446,4447
< CEIN  0.00000  8.77646  0.00000 250.00 250.00
< COCO  0.00000 10.60993  0.00000 825.00 825.00
---> CEIN  0.00000  8.77723  0.00000 250.00 250.00
> COCO  0.00000 10.61171  0.00000 825.00 825.004449,4451c4450,4452
< PM    5.45189 35.20515 12.15853  75.00  75.00
< PP   11.61414 43.44836 28.13313  38.24  38.24
< WF   35.20006 78.06928  5.00086   0.74   0.74
---> PM    5.45229 35.20515 12.16032  75.00  75.00
> PP   11.80005 45.00217 29.04102  38.24  38.24
> WF   35.20006 78.07701  5.00086   0.74   0.744463c4464
< max sdi =  392.417 
---> max sdi =  392.047 4465,4471c4466,4472
< CEIN  0.00000  8.77646  0.00000 250.00 250.00
< COCO  0.00000 10.60993  0.00000 825.00 825.00
< DF    3.13603 27.61661 22.79684 425.00 425.00
< IC    1.04211  6.09452  0.88848 150.00 500.00
< PM    5.21096 34.65783 16.66151 112.50 112.50
< PP   10.51368 40.06350 60.28859 100.00 100.00
< WF    2.52873  5.30578  5.25726 150.74 275.74
---> CEIN  0.00000  8.77723  0.000000 250.00 250.00
> COCO  0.00000 10.61171  0.000000 825.00 825.00
> DF    3.14884 27.68445 22.983527 425.00 425.00
> IC    1.00402  6.06886  0.824718 150.00 500.00
> PM    5.20639 34.64478 16.632280 112.50 112.50
> PP   10.64086 41.03086 61.755992 100.00 100.00
> WF    2.53101  5.46218  5.266755 150.74 275.74 OK
* checking PDF version of manual ... OK

macbook:Desktop hamannjd$ 

I need to control the number of digits printed to remove the , but need to focus
on the max sdi values.

I'm assuming this is a 32/64-bit issue, but don't yet know how to
control for that.

Ideas?

Respectfully,
Jeff.


Jeff Hamann, PhD
PO Box 1421
Corvallis, Oregon 97339-1421
541-754-2457
jeff.hamann[at]forestinformatics[dot]com
jeff.d.hamann[at]gmail[dot]com
http://www.forestinformatics.com
http://en.wikipedia.org/wiki/Forest_informatics

To ensure that your email is processed, include a subject entry in your email.





	[[alternative HTML version deleted]]

Prof Brian Ripley

2012-Jan-12 04:51 UTC

head link

[Rd] R CMD check pkg and 32/64 bit.

Take a closer look: the differences in output are not just in trailing 
digits.

We solve the latter in R itself mainly by use of e.g. options(digits=5) 
in the relevant \examples{} sections.

However, we also try to remove the numerical instability in the 
algorithms that leads to this.  Perhaps some convergence criterion is 
too loose?

Also, you can find out if this really is a 32/64-bit issue by running 
both architectures on the Mac (although 32/64 tends to be closer on that 
platform than on Linux or Windows).

On 11/01/2012 22:33, Jeff Hamann wrote:> R gurus:
>
> I'm trying to get another round of rconifers out and I need some
advice/help crushing differences in the examples test.
>
> I'm trying to make sure the max sdi values are being respected.
>
> I've added a tests/rconifers-Ex.Rout.save (from windows
i386-pc-mingw32) and when I ran R CMD check (both R-2.13.0), I got the following
results:
>
> * using log directory 'c:/conifers/trunk/rconifers.Rcheck'
> * using R version 2.13.0 (2011-04-13)
> * using platform: i386-pc-mingw32 (32-bit)
> * using session charset: ISO8859-1
> * checking for file 'rconifers/DESCRIPTION' ... OK
> * this is package 'rconifers' version '1.0.7'
> * checking package dependencies ... OK
> * checking if this is a source package ... OK
> * checking for executable files ... OK
> * checking whether package 'rconifers' can be installed ... OK
> * checking installed package size ... OK
> * checking package directory ... OK
> * checking for portable file names ... OK
> * checking DESCRIPTION meta-information ... OK
> * checking top-level files ... OK
> * checking index information ... OK
> * checking package subdirectories ... OK
> * checking R files for non-ASCII characters ... OK
> * checking R files for syntax errors ... OK
> * checking whether the package can be loaded ... OK
> * checking whether the package can be loaded with stated dependencies ...
OK
> * checking whether the package can be unloaded cleanly ... OK
> * checking for unstated dependencies in R code ... OK
> * checking S3 generic/method consistency ... OK
> * checking replacement functions ... OK
> * checking foreign function calls ... OK
> * checking R code for possible problems ... OK
> * checking Rd files ... OK
> * checking Rd metadata ... OK
> * checking Rd cross-references ... OK
> * checking for missing documentation entries ... OK
> * checking for code/documentation mismatches ... OK
> * checking Rd \usage sections ... OK
> * checking Rd contents ... OK
> * checking for unstated dependencies in examples ... OK
> * checking contents of 'data' directory ... OK
> * checking data for non-ASCII characters ... OK
> * checking data for ASCII and uncompressed saves ... OK
> * checking line endings in C/C++/Fortran sources/headers ... WARNING
> Found the following sources/headers with CR or CRLF line endings:
>    src/coeffs_cips.c
>    src/coeffs_mgt.c
>    src/coeffs_smc.c
>    src/coeffs_swo.c
>    src/coeffs_swohybrid.c
>    src/conifers.h
>    src/file_io.c
>    src/grow.c
>    src/model_cips.c
>    src/model_smc.c
>    src/model_swo.c
>    src/model_swohybrid.c
>    src/mortality.c
>    src/plot.c
>    src/rconifers.c
>    src/stats.c
>    src/thin.c
> Some Unix compilers require LF line endings.
> * checking line endings in Makefiles ... OK
> * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
> * checking examples ... OK
> * checking differences from 'rconifers-Ex.Rout' to
'rconifers-Ex.Rout.save' ... OK
> * checking PDF version of manual ... OK
> WARNING: There was 1 warning, see
>    'c:/conifers/trunk/rconifers.Rcheck/00check.log'
> for details
>
> The magic line is:
>
> * checking differences from 'rconifers-Ex.Rout' to
'rconifers-Ex.Rout.save' ... OK
>
> which tells me that the check file matched the expected file.
>
>
>
> When I ran the check under OSX and got the following results:
>
> macbook:Desktop hamannjd$ R CMD check rconifers
> * using log directory ?/Users/hamannjd/Desktop/rconifers.Rcheck?
> * using R version 2.13.0 (2011-04-13)
> * using platform: x86_64-apple-darwin10.7.0 (64-bit)
> * using session charset: UTF-8
> * checking for file ?rconifers/DESCRIPTION? ... OK
> * this is package ?rconifers? version ?1.0.7?
> * checking package dependencies ... OK
> * checking if this is a source package ... OK
> * checking for executable files ... OK
> * checking whether package ?rconifers? can be installed ... OK
> * checking installed package size ... OK
> * checking package directory ... OK
> * checking for portable file names ... OK
> * checking for sufficient/correct file permissions ... OK
> * checking DESCRIPTION meta-information ... OK
> * checking top-level files ... OK
> * checking index information ... OK
> * checking package subdirectories ... OK
> * checking R files for non-ASCII characters ... OK
> * checking R files for syntax errors ... OK
> * checking whether the package can be loaded ... OK
> * checking whether the package can be loaded with stated dependencies ...
OK
> * checking whether the package can be unloaded cleanly ... OK
> * checking for unstated dependencies in R code ... OK
> * checking S3 generic/method consistency ... OK
> * checking replacement functions ... OK
> * checking foreign function calls ... OK
> * checking R code for possible problems ... OK
> * checking Rd files ... OK
> * checking Rd metadata ... OK
> * checking Rd cross-references ... OK
> * checking for missing documentation entries ... OK
> * checking for code/documentation mismatches ... OK
> * checking Rd \usage sections ... OK
> * checking Rd contents ... OK
> * checking for unstated dependencies in examples ... OK
> * checking contents of 'data' directory ... OK
> * checking data for non-ASCII characters ... OK
> * checking data for ASCII and uncompressed saves ... OK
> * checking line endings in C/C++/Fortran sources/headers ... OK
> * checking line endings in Makefiles ... OK
> * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
> * checking examples ... OK
> * checking differences from ?rconifers-Ex.Rout? to ?rconifers-Ex.Rout.save?
...
> 0a1
>>> options(pager = "console")
> 377,383c378,384
> <  1    1      DF 2.08 0.61  7.08 0.845       1  100        4.40      0
> <  2    1      PP 4.80 2.91 11.50 0.852       1  100        7.55      0
> <  3    2      IC 0.60 0.00  1.70 0.706       1  100        1.17      0
> <  4    2      PP 0.51 0.00  1.34 0.478       1  100        1.37      0
> <  5    2      IC 0.50 0.00  1.06 0.623       1  100        0.98      0
> <  6    2      IC 0.34 0.00  0.76 0.474       1  100        0.60      0
> <  7    2      IC 0.17 0.00  0.58 0.310       1  100        0.29      0
> ---
>> 1    1      DF  2.08  0.61  7.08 0.845       1 100.00    4.400000     
0
>> 2    1      PP  4.80  2.91 11.50 0.852       1 100.00    7.550000     
0
>> 3    2      WF 49.00 35.20 77.96 0.368       1   2.96   30.152669     
0
>> 4    2      PP  2.43  1.10  6.28 0.705       1 100.00    3.773147     
0
>> 5    2    COCO  0.49  0.00  3.90 1.000      18 100.00    2.360064     
0
>> 6    2      DF  1.06  0.00  3.88 0.794       1 100.00    2.973220     
0
>> 7    2      IC  0.60  0.00  1.70 0.706       1 100.00    1.170000     
0
> 2076c2077
> <  max sdi =  400.955
> ---
>> max sdi =  400.222
> 2078,2084c2079,2085
> <  CEIN  0.000000  8.57557  0.000000 250.00 250.00
> <  COCO  0.000000 10.65750  0.000000 825.00 825.00
> <  DF    3.871848 32.37521 34.749737 425.00 425.00
> <  IC    0.680329  7.94603  0.757329 300.00 500.00
> <  PM    4.882285 33.89248 84.505614 650.00 650.00
> <  PP   10.747477 42.37973 62.999774 100.00 100.00
> <  WF    1.961988  7.49918  5.264321 250.74 275.74
> ---
>> CEIN  0.000000  8.83025  0.00000 250.00 250.00
>> COCO  0.000000 10.52370  0.00000 825.00 825.00
>> DF    3.380206 28.96161 26.48507 425.00 425.00
>> IC    0.997025  8.10528  1.49098 275.00 500.00
>> PM    5.036259 34.20425 89.91983 650.00 650.00
>> PP   10.505312 41.18743 60.19271 100.00 100.00
>> WF    2.089732  7.81061  5.37670 225.74 275.74
> 2094c2095
> <  max sdi =  400.955
> ---
>> max sdi =  400.222
> 2096,2102c2097,2103
> <  CEIN  0.000000  8.57557  0.000000 250.00 250.00
> <  COCO  0.000000 10.65750  0.000000 825.00 825.00
> <  DF    3.871848 32.37521 34.749737 425.00 425.00
> <  IC    0.680329  7.94603  0.757329 300.00 500.00
> <  PM    4.882285 33.89248 84.505614 650.00 650.00
> <  PP   10.747477 42.37973 62.999774 100.00 100.00
> <  WF    1.961988  7.49918  5.264321 250.74 275.74
> ---
>> CEIN  0.000000  8.83025  0.00000 250.00 250.00
>> COCO  0.000000 10.52370  0.00000 825.00 825.00
>> DF    3.380206 28.96161 26.48507 425.00 425.00
>> IC    0.997025  8.10528  1.49098 275.00 500.00
>> PM    5.036259 34.20425 89.91983 650.00 650.00
>> PP   10.505312 41.18743 60.19271 100.00 100.00
>> WF    2.089732  7.81061  5.37670 225.74 275.74
> 2513c2514
> <  max sdi =  398.99
> ---
>> max sdi =  398.321
> 2515,2521c2516,2522
> <  CEIN  0.00000  8.74666  0.000000 250.00 250.00
> <  COCO  0.00000 10.60946  0.000000 825.00 825.00
> <  DF    3.17032 28.17772 23.298195 425.00 425.00
> <  IC    1.02363  6.08777  0.857239 150.00 500.00
> <  PM    5.02216 33.93141 89.417000 650.00 650.00
> <  PP   10.53209 40.19664 60.500008 100.00 100.00
> <  WF    2.52830  5.38780  5.255483 150.74 275.74
> ---
>> CEIN  0.00000  8.73566  0.000000 250.00 250.00
>> COCO  0.00000 10.60959  0.000000 825.00 825.00
>> DF    3.11552 27.87012 22.499678 425.00 425.00
>> IC    1.02147  6.04613  0.853626 150.00 500.00
>> PM    5.01949 33.92538 89.322114 650.00 650.00
>> PP   10.60861 40.42145 61.382237 100.00 100.00
>> WF    2.52834  5.37677  5.255645 150.74 275.74
> 2535c2536
> <  max sdi =  392.682
> ---
>> max sdi =  392.183
> 2537,2543c2538,2544
> <  CEIN  0.00000  8.74666  0.000000 250.0000 250.0000
> <  COCO  0.00000 10.60946  0.000000 825.0000 825.0000
> <  DF    6.12078 42.83671 10.413135  50.9615  50.9615
> <  IC    1.02363  6.08777  0.857239 150.0000 500.0000
> <  PM    5.02216 33.93141 89.417000 650.0000 650.0000
> <  PP   10.53209 40.19664 60.500008 100.0000 100.0000
> <  WF    2.52830  5.38780  5.255483 150.7400 275.7400
> ---
>> CEIN  0.00000  8.73566  0.000000 250.0000 250.0000
>> COCO  0.00000 10.60959  0.000000 825.0000 825.0000
>> DF    6.01295 42.00488 10.049466  50.9615  50.9615
>> IC    1.02147  6.04613  0.853626 150.0000 500.0000
>> PM    5.01949 33.92538 89.322114 650.0000 650.0000
>> PP   10.60861 40.42145 61.382237 100.0000 100.0000
>> WF    2.52834  5.37677  5.255645 150.7400 275.7400
> 2555c2556
> <  max sdi =  390.319
> ---
>> max sdi =  389.507
> 2557,2563c2558,2564
> <  CEIN  0.00000  8.74666 0.0000000 250.00000 250.00000
> <  COCO  0.00000 10.60946 0.0000000 825.00000 825.00000
> <  DF    6.25984 44.26174 3.2535039  15.22296  15.22296
> <  IC    1.20533 11.86522 0.0609674   7.69418  11.76394
> <  PM    4.85482 33.74425 2.0646472  16.06105  16.06105
> <  PP   11.23175 42.87801 8.8974623  12.93139  12.93139
> <  WF    3.77143  6.55036 0.3592728   4.63112   6.08461
> ---
>> CEIN  0.00000  8.73566 0.0000000 250.00000 250.00000
>> COCO  0.00000 10.60959 0.0000000 825.00000 825.00000
>> DF    6.15956 43.58377 3.1501027  15.22296  15.22296
>> IC    1.20280 11.77230 0.0607118   7.69418  11.76394
>> PM    4.84104 33.71376 2.0529479  16.06105  16.06105
>> PP   11.34546 43.47322 9.0785299  12.93139  12.93139
>> WF    3.77112  6.46029 0.3592136   4.63112   6.08461
> 2575c2576
> <  max sdi =  380.439
> ---
>> max sdi =  380.211
> 2577,2578c2578,2579
> <  CEIN  0.00000  8.74666  0.00000 250.00 250.00
> <  COCO  0.00000 10.60946  0.00000 825.00 825.00
> ---
>> CEIN  0.00000  8.73566  0.00000 250.00 250.00
>> COCO  0.00000 10.60959  0.00000 825.00 825.00
> 2581,2583c2582,2584
> <  PM    5.44998 35.20515 12.15001  75.00  75.00
> <  PP   11.68521 44.09759 28.47847  38.24  38.24
> <  WF   35.20006 78.07609  5.00086   0.74   0.74
> ---
>> PM    5.45033 35.20515 12.15159  75.00  75.00
>> PP   11.79190 44.68573 29.00089  38.24  38.24
>> WF   35.20006 78.07794  5.00086   0.74   0.74
> 2595c2596
> <  max sdi =  392.617
> ---
>> max sdi =  391.885
> 2597,2603c2598,2604
> <  CEIN  0.00000  8.74666  0.000000 250.00 250.00
> <  COCO  0.00000 10.60946  0.000000 825.00 825.00
> <  DF    3.17032 28.17772 23.298195 425.00 425.00
> <  IC    1.02363  6.08777  0.857239 150.00 500.00
> <  PM    5.21231 34.66273 16.670145 112.50 112.50
> <  PP   10.53209 40.19664 60.500008 100.00 100.00
> <  WF    2.52830  5.38780  5.255483 150.74 275.74
> ---
>> CEIN  0.00000  8.73566  0.000000 250.00 250.00
>> COCO  0.00000 10.60959  0.000000 825.00 825.00
>> DF    3.11552 27.87012 22.499678 425.00 425.00
>> IC    1.02147  6.04613  0.853626 150.00 500.00
>> PM    5.20525 34.64531 16.624992 112.50 112.50
>> PP   10.60861 40.42145 61.382237 100.00 100.00
>> WF    2.52834  5.37677  5.255645 150.74 275.74
> 3543,3544c3544,3545
> <  x0 =  6.83298
> <  max sdi =  398.507
> ---
>> x0 =  6.83124
>> max sdi =  398.773
> 3546,3552c3547,3553
> <  CEIN  0.00000  8.76683  0.000000 250.0000 250.0000
> <  COCO  0.00000 10.60933  0.000000 825.0000 825.0000
> <  DF    3.14048 27.68502 21.449519 398.7488 398.7488
> <  IC    1.01997  6.15100  0.798552 140.7349 469.1162
> <  PM    5.02023 33.92625 83.829537 609.8511 609.8511
> <  PP   10.60746 40.60003 57.578321  93.8232  93.8232
> <  WF    2.53410  5.48953  4.953497 141.4292 258.7082
> ---
>> CEIN  0.00000  8.74366  0.00000 250.0000 250.0000
>> COCO  0.00000 10.61129  0.00000 825.0000 825.0000
>> DF    3.16517 28.02873 21.78805 398.7488 398.7488
>> IC    1.00100  6.04754  0.76913 140.7349 469.1162
>> PM    5.01960 33.92487 83.80863 609.8511 609.8511
>> PP   10.57284 40.39489 57.20315  93.8232  93.8232
>> WF    2.53248  5.45694  4.94718 141.4292 258.7082
> 3565,3566c3566,3567
> <  x0 =  6.83298
> <  max sdi =  392.685
> ---
>> x0 =  6.83124
>> max sdi =  392.866
> 3568,3574c3569,3575
> <  CEIN  0.00000  8.76683  0.000000 250.0000 250.0000
> <  COCO  0.00000 10.60933  0.000000 825.0000 825.0000
> <  DF    6.06366 42.37577 10.219698  50.9615  50.9615
> <  IC    1.01997  6.15100  0.798552 140.7349 469.1162
> <  PM    5.02023 33.92625 83.829537 609.8511 609.8511
> <  PP   10.60746 40.60003 57.578321  93.8232  93.8232
> <  WF    2.53410  5.48953  4.953497 141.4292 258.7082
> ---
>> CEIN  0.00000  8.74366  0.00000 250.0000 250.0000
>> COCO  0.00000 10.61129  0.00000 825.0000 825.0000
>> DF    6.10480 42.74745 10.35884  50.9615  50.9615
>> IC    1.00100  6.04754  0.76913 140.7349 469.1162
>> PM    5.01960 33.92487 83.80863 609.8511 609.8511
>> PP   10.57284 40.39489 57.20315  93.8232  93.8232
>> WF    2.53248  5.45694  4.94718 141.4292 258.7082
> 3586,3587c3587,3588
> <  x0 =  6.83298
> <  max sdi =  389.955
> ---
>> x0 =  6.83124
>> max sdi =  390.023
> 3589,3595c3590,3596
> <  CEIN  0.00000  8.76683 0.0000000 250.00000 250.00000
> <  COCO  0.00000 10.60933 0.0000000 825.00000 825.00000
> <  DF    6.22626 44.06074 3.2186911  15.22296  15.22296
> <  IC    1.20102 12.07219 0.0605327   7.69418  11.76394
> <  PM    4.84437 33.71814 2.0557684  16.06105  16.06105
> <  PP   11.29807 43.23521 9.0028449  12.93139  12.93139
> <  WF    3.77756  6.95055 0.3604408   4.63112   6.08461
> ---
>> CEIN  0.00000  8.74366 0.0000000 250.00000 250.00000
>> COCO  0.00000 10.61129 0.0000000 825.00000 825.00000
>> DF    6.24021 44.22627 3.2331328  15.22296  15.22296
>> IC    1.17869 11.77423 0.0583023   7.69418  11.76394
>> PM    4.84002 33.71119 2.0520768  16.06105  16.06105
>> PP   11.28971 43.23397 8.9895303  12.93139  12.93139
>> WF    3.77333  6.65046 0.3596351   4.63112   6.08461
> 3607,3608c3608,3609
> <  x0 =  6.83298
> <  max sdi =  380.894
> ---
>> x0 =  6.83124
>> max sdi =  380.956
> 3610,3611c3611,3612
> <  CEIN  0.0000  8.76683  0.00000 250.000000 250.000000
> <  COCO  0.0000 10.60933  0.00000 825.000000 825.000000
> ---
>> CEIN  0.00000  8.74366  0.00000 250.000000 250.000000
>> COCO  0.00000 10.61129  0.00000 825.000000 825.000000
> 3614,3616c3615,3617
> <  PM    5.4510 35.20515 10.65304  65.734863  65.734863
> <  PP   11.7561 44.51895 25.29875  33.561724  33.561724
> <  WF   35.2001 78.07525  4.69197   0.694292   0.694292
> ---
>> PM    5.44942 35.20515 10.64688  65.734863  65.734863
>> PP   11.72679 44.43688 25.17262  33.561724  33.561724
>> WF   35.20006 78.07609  4.69197   0.694292   0.694292
> 3627,3628c3628,3629
> <  x0 =  6.83298
> <  max sdi =  392.251
> ---
>> x0 =  6.83124
>> max sdi =  392.539
> 3630,3636c3631,3637
> <  CEIN  0.00000  8.76683  0.000000 250.0000 250.0000
> <  COCO  0.00000 10.60933  0.000000 825.0000 825.0000
> <  DF    3.14048 27.68502 21.449519 398.7488 398.7488
> <  IC    1.01997  6.15100  0.798552 140.7349 469.1162
> <  PM    5.20745 34.64782 16.639048 112.5000 112.5000
> <  PP   10.60746 40.60003 57.578321  93.8232  93.8232
> <  WF    2.53410  5.48953  4.953497 141.4292 258.7082
> ---
>> CEIN  0.00000  8.74366  0.00000 250.0000 250.0000
>> COCO  0.00000 10.61129  0.00000 825.0000 825.0000
>> DF    3.16517 28.02873 21.78805 398.7488 398.7488
>> IC    1.00100  6.04754  0.76913 140.7349 469.1162
>> PM    5.20398 34.64385 16.61688 112.5000 112.5000
>> PP   10.57284 40.39489 57.20315  93.8232  93.8232
>> WF    2.53248  5.45694  4.94718 141.4292 258.7082
> 3645c3646
> <  PM   0.1872181 0.7215733 -67.19049 -497.3511 -497.3511
> ---
>> PM   0.1843748 0.7189766 -67.19175 -497.3511 -497.3511
> 4375c4376
> <  max sdi =  398.846
> ---
>> max sdi =  398.41
> 4377,4383c4378,4384
> <  CEIN  0.00000  8.77646  0.00000 250.00 250.00
> <  COCO  0.00000 10.60993  0.00000 825.00 825.00
> <  DF    3.13603 27.61661 22.79684 425.00 425.00
> <  IC    1.04211  6.09452  0.88848 150.00 500.00
> <  PM    5.02090 33.92971 89.37223 650.00 650.00
> <  PP   10.51368 40.06350 60.28859 100.00 100.00
> <  WF    2.52873  5.30578  5.25726 150.74 275.74
> ---
>> CEIN  0.00000  8.77723  0.000000 250.00 250.00
>> COCO  0.00000 10.61171  0.000000 825.00 825.00
>> DF    3.14884 27.68445 22.983527 425.00 425.00
>> IC    1.00402  6.06886  0.824718 150.00 500.00
>> PM    5.01909 33.92520 89.307792 650.00 650.00
>> PP   10.64086 41.03086 61.755992 100.00 100.00
>> WF    2.53101  5.46218  5.266755 150.74 275.74
> 4403c4404
> <  max sdi =  392.643
> ---
>> max sdi =  392.207
> 4405,4411c4406,4412
> <  CEIN  0.00000  8.77646  0.00000 250.0000 250.0000
> <  COCO  0.00000 10.60993  0.00000 825.0000 825.0000
> <  DF    6.06295 42.12905 10.21732  50.9615  50.9615
> <  IC    1.04211  6.09452  0.88848 150.0000 500.0000
> <  PM    5.02090 33.92971 89.37223 650.0000 650.0000
> <  PP   10.51368 40.06350 60.28859 100.0000 100.0000
> <  WF    2.52873  5.30578  5.25726 150.7400 275.7400
> ---
>> CEIN  0.00000  8.77723  0.000000 250.0000 250.0000
>> COCO  0.00000 10.61171  0.000000 825.0000 825.0000
>> DF    6.09105 42.58754 10.312236  50.9615  50.9615
>> IC    1.00402  6.06886  0.824718 150.0000 500.0000
>> PM    5.01909 33.92520 89.307792 650.0000 650.0000
>> PP   10.64086 41.03086 61.755992 100.0000 100.0000
>> WF    2.53101  5.46218  5.266755 150.7400 275.7400
> 4423c4424
> <  max sdi =  389.885
> ---
>> max sdi =  389.775
> 4425,4431c4426,4432
> <  CEIN  0.00000  8.77646 0.0000000 250.00000 250.00000
> <  COCO  0.00000 10.60993 0.0000000 825.00000 825.00000
> <  DF    6.16773 43.35916 3.1584660  15.22296  15.22296
> <  IC    1.22710 11.95206 0.0631897   7.69418  11.76394
> <  PM    4.84963 33.73568 2.0602370  16.06105  16.06105
> <  PP   11.24155 42.89267 8.9129985  12.93139  12.93139
> <  WF    3.76924  6.14318 0.3588566   4.63112   6.08461
> ---
>> CEIN  0.00000  8.77723 0.0000000 250.00000 250.00000
>> COCO  0.00000 10.61171 0.0000000 825.00000 825.00000
>> DF    6.23059 44.06992 3.2231765  15.22296  15.22296
>> IC    1.18225 11.84774 0.0586553   7.69418  11.76394
>> PM    4.84046 33.71283 2.0524548  16.06105  16.06105
>> PP   11.35786 43.84667 9.0983840  12.93139  12.93139
>> WF    3.77715  6.98331 0.3603637   4.63112   6.08461
> 4443c4444
> <  max sdi =  380.596
> ---
>> max sdi =  380.196
> 4445,4446c4446,4447
> <  CEIN  0.00000  8.77646  0.00000 250.00 250.00
> <  COCO  0.00000 10.60993  0.00000 825.00 825.00
> ---
>> CEIN  0.00000  8.77723  0.00000 250.00 250.00
>> COCO  0.00000 10.61171  0.00000 825.00 825.00
> 4449,4451c4450,4452
> <  PM    5.45189 35.20515 12.15853  75.00  75.00
> <  PP   11.61414 43.44836 28.13313  38.24  38.24
> <  WF   35.20006 78.06928  5.00086   0.74   0.74
> ---
>> PM    5.45229 35.20515 12.16032  75.00  75.00
>> PP   11.80005 45.00217 29.04102  38.24  38.24
>> WF   35.20006 78.07701  5.00086   0.74   0.74
> 4463c4464
> <  max sdi =  392.417
> ---
>> max sdi =  392.047
> 4465,4471c4466,4472
> <  CEIN  0.00000  8.77646  0.00000 250.00 250.00
> <  COCO  0.00000 10.60993  0.00000 825.00 825.00
> <  DF    3.13603 27.61661 22.79684 425.00 425.00
> <  IC    1.04211  6.09452  0.88848 150.00 500.00
> <  PM    5.21096 34.65783 16.66151 112.50 112.50
> <  PP   10.51368 40.06350 60.28859 100.00 100.00
> <  WF    2.52873  5.30578  5.25726 150.74 275.74
> ---
>> CEIN  0.00000  8.77723  0.000000 250.00 250.00
>> COCO  0.00000 10.61171  0.000000 825.00 825.00
>> DF    3.14884 27.68445 22.983527 425.00 425.00
>> IC    1.00402  6.06886  0.824718 150.00 500.00
>> PM    5.20639 34.64478 16.632280 112.50 112.50
>> PP   10.64086 41.03086 61.755992 100.00 100.00
>> WF    2.53101  5.46218  5.266755 150.74 275.74
>   OK
> * checking PDF version of manual ... OK
>
> macbook:Desktop hamannjd$
>
> I need to control the number of digits printed to remove the , but need to
focus on the max sdi values.
>
> I'm assuming this is a 32/64-bit issue, but don't yet know how to
control for that.
>
> Ideas?
>
> Respectfully,
> Jeff.
>
>
> Jeff Hamann, PhD
> PO Box 1421
> Corvallis, Oregon 97339-1421
> 541-754-2457
> jeff.hamann[at]forestinformatics[dot]com
> jeff.d.hamann[at]gmail[dot]com
> http://www.forestinformatics.com
> http://en.wikipedia.org/wiki/Forest_informatics
>
> To ensure that your email is processed, include a subject entry in your
email.
>
>
>
>
>
> 	[[alternative HTML version deleted]]
>
>
>
>
> ______________________________________________
> R-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-devel

-- 
Brian D. Ripley,                  ripley at stats.ox.ac.uk
Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
University of Oxford,             Tel:  +44 1865 272861 (self)
1 South Parks Road,                     +44 1865 272866 (PA)
Oxford OX1 3TG, UK                Fax:  +44 1865 272595

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