R version 2.9.0 running on Centos (Red Hat linux). I have a pair of packages coxme and bdsmatrix. The latter is installed in my local library (I don't have permission for global install at work.) That is, it is in the location pointed to in R_LIBS_USER. In R, the command library(bdsmatrix) works fine. Coxme depends on bdsmatrix, in fact uses some cross-calls to it's C routines, which have been exported using the R_RegisterCCallable function. All works as expected: modules load, tests succeed. Running R CMD check fails however, tmt703% R CMD check coxme * checking for working pdflatex ... OK * using log directory '/people/biostat2/therneau/research/surv/Rforge/pkg/coxme.Rcheck' * using R version 2.9.0 (2009-04-17) * using session charset: UTF-8 * checking for file 'coxme/DESCRIPTION' ... OK * this is package 'coxme' version '1.0' * checking package name space information ... OK * checking package dependencies ... ERROR Packages required but not available: bsdmatrix Is this an oversight in the check routine? Terry T.
Terry Therneau skrev:> R version 2.9.0 running on Centos (Red Hat linux). > > I have a pair of packages coxme and bdsmatrix. The latter is installed > in my local library (I don't have permission for global install at > work.) That is, it is in the location pointed to in R_LIBS_USER. In R, > the command library(bdsmatrix) works fine. > > Coxme depends on bdsmatrix, in fact uses some cross-calls to it's C > routines, which have been exported using the R_RegisterCCallable > function. All works as expected: modules load, tests succeed. > > Running R CMD check fails however, > > tmt703% R CMD check coxme > * checking for working pdflatex ... OK > * using log directory > '/people/biostat2/therneau/research/surv/Rforge/pkg/coxme.Rcheck' > * using R version 2.9.0 (2009-04-17) > * using session charset: UTF-8 > * checking for file 'coxme/DESCRIPTION' ... OK > * this is package 'coxme' version '1.0' > * checking package name space information ... OK > * checking package dependencies ... ERROR > Packages required but not available: > bsdmatrixLooks like a spelling error somewhere. The name is bdsmatrix (see above). G?ran> > Is this an oversight in the check routine? > > Terry T. > > ______________________________________________ > R-devel at r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel
> Looks like a spelling error somewhere. The name is bdsmatrix (seeabove). That is so very obvious -- but only after someone else pointed it out. The eye sometimes sees what it expects to see. Thanks for the quick response. Terry T.